PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038546-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 296aa    MW: 33434.5 Da    PI: 6.8689
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038546-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.82.5e-54151421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++PwdLp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l
  PSME_00038546-RA  15 LPPGFRFHPTDEELVVHYLKKKASSSPLPV-SIIAEIDLYKFDPWDLPGKTSYGEHEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIL 106
                       79****************************.89***************8888899*************************************9 PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ +++++g+kk Lvfy+gr pkg ktdW+mheyrl
  PSME_00038546-RA 107 TSaGRQKIGVKKALVFYSGRPPKGIKTDWIMHEYRL 142
                       9978889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-656172IPR003441NAC domain
PROSITE profilePS5100562.46515172IPR003441NAC domain
PfamPF023653.7E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
GIALGWDYVI GVMELPPGFR FHPTDEELVV HYLKKKASSS PLPVSIIAEI DLYKFDPWDL  60
PGKTSYGEHE WYFFSPRDRK YPNGARPNRA AASGYWKATG TDKPILTSAG RQKIGVKKAL  120
VFYSGRPPKG IKTDWIMHEY RLAEGISKPS SLASRKGSLR LDDWVLCRIY KKSRHSPRMA  180
ESEKDESHVE EGSSSLPDIH HDQRLQLQKR GPFSSLLASA VDVLDESLID VESSQETGYQ  240
GDPLFPSDSR NENISNNNDS NNDPTILNTL QPQAFHEEKL LGTMGDFRQI YQSHFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-731317218168NAC domain-containing protein 19
3swm_B1e-731317218168NAC domain-containing protein 19
3swm_C1e-731317218168NAC domain-containing protein 19
3swm_D1e-731317218168NAC domain-containing protein 19
3swp_A1e-731317218168NAC domain-containing protein 19
3swp_B1e-731317218168NAC domain-containing protein 19
3swp_C1e-731317218168NAC domain-containing protein 19
3swp_D1e-731317218168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1046210.0BT104621.1 Picea glauca clone GQ02812_K18 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841705.11e-104NAC transcription factor 56
SwissprotQ8GY424e-91NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A482ERL11e-167A0A482ERL1_9SPER; NAC3 domain protein
STRINGERN033801e-103(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.14e-93NAC domain containing protein 25