PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00038470-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 482aa MW: 51318.8 Da PI: 7.0816

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00038470-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	49.7	9.8e-16	122	153	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 s fh lsefDe+krsCrrrLa+hnerrrk+q+ PSME_00038470-RA 122 SPFHILSEFDEGKRSCRRRLAGHNERRRKPQP 153 77***************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	11.485	122	151	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.24E-12	122	156	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.3E-8	123	150	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MKITTSPTAT WEWDNGENLM LFPGNANGSR KATVNSKLKD EPKHDATGAG FLRVQSVSED 60 GNSSSGEIRT SNASTPDDQQ QQSGVVTVAV PAGSGDSGAI GLKLGKRTYF EAVKTIPATA 120 PSPFHILSEF DEGKRSCRRR LAGHNERRRK PQPDSLAINP ARFASAFYDD RRLNSILMDR 180 SPFMHPRITS NSILEDSIDF KLGGYGKGAW PRVKAEDQSS YDGQVSAGTL SRHNADRLLF 240 LLQSSKTLPG GAINQDMHQY MQSSGAHAGQ ALTLSSSSGE NLAGLDVASA THGLSGVSDS 300 GCALSLLSFQ SGGSRASGSA SFDMTTRSGL TMDQLIQGDQ PLMAQPLMQG VQHNFGLFAA 360 DKLLTICSQS STNLATGGFP ATVVNSMDKQ HQGEALVSNA GGIGNFGGHV FGLLQGSSFR 420 GSQAASSQDI QGTIDLMRRS SETQSNNSHD QPGMVHHGSR QYTDAQLLRS FESSIYDTHQ 480 LL

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MKITTSPTAT WEWDNGENLM LFPGNANGSR KATVNSKLKD EPKHDATGAG FLRVQSVSED  60
GNSSSGEIRT SNASTPDDQQ QQSGVVTVAV PAGSGDSGAI GLKLGKRTYF EAVKTIPATA  120
PSPFHILSEF DEGKRSCRRR LAGHNERRRK PQPDSLAINP ARFASAFYDD RRLNSILMDR  180
SPFMHPRITS NSILEDSIDF KLGGYGKGAW PRVKAEDQSS YDGQVSAGTL SRHNADRLLF  240
LLQSSKTLPG GAINQDMHQY MQSSGAHAGQ ALTLSSSSGE NLAGLDVASA THGLSGVSDS  300
GCALSLLSFQ SGGSRASGSA SFDMTTRSGL TMDQLIQGDQ PLMAQPLMQG VQHNFGLFAA  360
DKLLTICSQS STNLATGGFP ATVVNSMDKQ HQGEALVSNA GGIGNFGGHV FGLLQGSSFR  420
GSQAASSQDI QGTIDLMRRS SETQSNNSHD QPGMVHHGSR QYTDAQLLRS FESSIYDTHQ  480
LL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ711108	0.0	KJ711108.1 Pinus tabuliformis clone PtSPL1 SPL1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K0M756	0.0	A0A0K0M756_PINTB; SPL1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-13	SBP family protein