PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038448-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 491aa    MW: 53976.6 Da    PI: 10.8105
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038448-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18287321135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+ C+t kTplWR+gp+g+k+LCnaCG++y+k g+
  PSME_00038448-RA 287 CTDCKTVKTPLWRNGPQGPKSLCNACGIRYKKLGK 321
                       ********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-18281338IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14281324No hitNo description
PROSITE profilePS5011413.059281317IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.7E-16285323IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440287312IPR000679Zinc finger, GATA-type
CDDcd002024.45E-13287324No hitNo description
PfamPF003202.0E-16287321IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
RRSTLAVRCG VWTAVVDPDG RTVIAQVTRW RAQIFLGSLF EFSPALIGDK RFKKKQKWRR  60
RNSTISGKVW FFLAVGRGLG FASVGAVGIV EWRKIAESSR GKNSREIRRF AMFQGAAAAA  120
YYSTPVYGHS HYKKFWLKKM ESEDDPAAAA PPEGGVLMRN KSAYAMNCSP LELRGSCSPP  180
SSSSVRITGV KSVTENNNIK KARCPPERNS QHKSELDYTL AIGVGVGVGV GMSDASSEEN  240
RDVVSDGFSE DKFHKFMAPG SNSMRQEDTQ PFNTINSNSP RAVTRMCTDC KTVKTPLWRN  300
GPQGPKSLCN ACGIRYKKLG KRPTGSFERP SSPPTPPISP SAKQIIKIGK RKRESEAGKT  360
KQQPRDAAAA VAAAVHHQPR KKIKTTSVME RLVVGRSDRA AMGPGSMSFS SPSRSQSDAP  420
ESPRLEQSEV GYYVEERNRN GAGRGEALRR WREVERIKRG LPRYGKIRSL AKDEEEGAVL  480
LMALSCGVAS C
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0799151e-105FJ079915.1 Pinus taeda isolate 4719 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799161e-105FJ079916.1 Pinus taeda isolate 4721 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799171e-105FJ079917.1 Pinus taeda isolate 4714 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799181e-105FJ079918.1 Pinus taeda isolate 4728 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799191e-105FJ079919.1 Pinus taeda isolate 4717 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799201e-105FJ079920.1 Pinus taeda isolate 4723 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799211e-105FJ079921.1 Pinus taeda isolate 4725 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799221e-105FJ079922.1 Pinus taeda isolate 4715 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799231e-105FJ079923.1 Pinus taeda isolate 4724 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799241e-105FJ079924.1 Pinus taeda isolate 4713 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799251e-105FJ079925.1 Pinus taeda isolate 4727 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799261e-105FJ079926.1 Pinus taeda isolate 4716 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799271e-105FJ079927.1 Pinus taeda isolate 4726 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799281e-105FJ079928.1 Pinus taeda isolate 4722 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799291e-105FJ079929.1 Pinus taeda isolate 4718 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799301e-105FJ079930.1 Pinus taeda isolate 4720 anonymous locus 0_738_01 genomic sequence.
GenBankFJ0799311e-105FJ079931.1 Pinus taeda isolate 4712 anonymous locus 0_738_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9QUV91e-104A0A0C9QUV9_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_7873_1747 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-15GATA family protein