PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00038160-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 127aa MW: 14121.2 Da PI: 8.2812 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 42.1 | 2.5e-13 | 2 | 61 | 1 | 55 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere 55 +C++C vlr++C+++C+l+p++ +++q++++++++k++G ++++l+++ pe+ r+ PSME_00038160-RA 2 SCNGCLVLRKGCSESCILRPCLnwintAESQANATRYLAKFYGHVELTNLIRNDPEHSRP 61 6*********************9999778999*********************9999994 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 3.1E-9 | 2 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MSCNGCLVLR KGCSESCILR PCLNWINTAE SQANATRYLA KFYGHVELTN LIRNDPEHSR 60 PVCEAGVESI LLGTFPAYTW ADFSCDIVGT ARQELQRSVK PIGRLKQLPM GFLQNPNTSS 120 SIAYIPR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D6RB68 | 5e-27 | A0A0D6RB68_ARACU; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 9e-26 | LOB domain-containing protein 40 |