PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038082-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 314aa    MW: 35015.1 Da    PI: 6.9322
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038082-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-09183233656
                       S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++++eq    ee   kn +p+ +e++ LA +l+++ rqV  W qNr a+ k
  PSME_00038082-RA 183 RLSREQGALVEESSVKNTTPDPKEKQALAFQLNISPRQVERWLQNRLARTK 233
                       5677777777888889******************************99887 PP
2HD-ZIP_I/II84.81.2e-27180267289
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                       kk+rls+eq +l+Ees  ++++ +p++K++la +L+++prqv+ W qnr ARtk+kq+E+dye Lkr+ ++l+een++L+ke e+Lr+
  PSME_00038082-RA 180 KKLRLSREQGALVEESSVKNTTPDPKEKQALAFQLNISPRQVERWLQNRLARTKLKQTEVDYELLKRCNESLAEENRKLHKELEKLRA 267
                       9****************9999*****************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.758175235IPR001356Homeobox domain
SuperFamilySSF466892.17E-10179243IPR009057Homeodomain-like
SMARTSM003890.0014179239IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-8180238IPR009057Homeodomain-like
CDDcd000869.59E-8180238No hitNo description
PfamPF000468.2E-7183233IPR001356Homeobox domain
PfamPF021835.0E-8235269IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.2E-17235278IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDQDCSTRLS LDLSLGTRTT IREKDHEYAS HRNVNGPPLE TLTKESGMDQ NCSTGLSLGL  60
TLGTGIATRQ SDHDYASHRN VNGPPVQLDP IPFDPVLPLS RAVALCHARD QLQSIDYQCH  120
GYSNEDAGTI NVSSSNNSNA TNLANGYAMF SRKRGGTEEL ENERGWSRAL SDLEEEGYSK  180
KLRLSREQGA LVEESSVKNT TPDPKEKQAL AFQLNISPRQ VERWLQNRLA RTKLKQTEVD  240
YELLKRCNES LAEENRKLHK ELEKLRAMKL EAPLRPPGTL TMCPSCESVS PANNTSHFTL  300
AKVQSMFKRG DFGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN42e-70A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-41Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein