PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00038063-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 187aa    MW: 20817.2 Da    PI: 4.5122
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00038063-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.8e-162372255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p++   r r++lg++ t+e+Aa+a++ a  +l+g
  PSME_00038063-RA 23 QFKGIRMRK-WGKWVSEIRMPNS---RGRIWLGSYETPEKAARAYDFAVYCLRG 72
                      59*****99.**********944...48********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.12E-272282No hitNo description
SuperFamilySSF541717.19E-202382IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-282381IPR001471AP2/ERF domain
PROSITE profilePS5103221.2322380IPR001471AP2/ERF domain
SMARTSM003806.4E-322386IPR001471AP2/ERF domain
PRINTSPR003671.7E-82435IPR001471AP2/ERF domain
PfamPF008472.0E-92472IPR001471AP2/ERF domain
PRINTSPR003671.7E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTRPSSNQNG HGKPENRSLK SQQFKGIRMR KWGKWVSEIR MPNSRGRIWL GSYETPEKAA  60
RAYDFAVYCL RGSKAKFNFP YSLPEFSCAS SLSPPQIQAA AAKFAEQECR TPSDEDIASS  120
SSCLEAESGI ESQEISVEQG PAFWDSVPED LDGCKSITLE DFTPLDLSME DFGVFFSLTE  180
DLDLGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-152083266ATERF1
3gcc_A1e-152083266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024182624.19e-41ethylene-responsive transcription factor ERF017
TrEMBLB8LPP64e-87B8LPP6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.16e-39ERF family protein