PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037996-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 461aa    MW: 50891.7 Da    PI: 4.6391
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037996-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.9e-32254310258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy+WrKYGqK +k+s++prsYYrCt ++C +kk+versaedp++++itYeg H h
  PSME_00037996-RA 254 DDGYKWRKYGQKAIKNSPHPRSYYRCTNPRCFAKKQVERSAEDPETITITYEGLHMH 310
                       8*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-29245311IPR003657WRKY domain
SuperFamilySSF1182901.7E-26251310IPR003657WRKY domain
SMARTSM007743.7E-36253312IPR003657WRKY domain
PROSITE profilePS5081126.636253313IPR003657WRKY domain
PfamPF031063.0E-25254310IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDSEMQSFCG IGKRKLHDQA SKISDCWDYC CSDLPILKKF NAVSPRKSSV DYPSEENIIP  60
DDDFDFSYMS ELLHDDQADV GNFPDVNLQS CDQSSQGGCG DYVEGFLQSE NPENILISAA  120
MNADNLKVLN GDQEIETGST CTNTYSFPTL MDVQSALLRE NQSGAVSAKL DTNIDSASNS  180
SSMSSVFNSF YAGGLRSQTW FPSSGLKRDH DILSQSSSRS FSRSIDELFY RRMNRAKSES  240
KYSLNIKCPG NNIDDGYKWR KYGQKAIKNS PHPRSYYRCT NPRCFAKKQV ERSAEDPETI  300
TITYEGLHMH YSYTQIQLTQ PNNNSSVRRL QGGNSIIIED ENPSKDHKGY YNNNNVDKGA  360
IDPITAPSSF KRDVVEDPTA TVAVHQCHHQ EEAEVEDQVE ENCERIDGRC DTFGAGGSCG  420
GDIGVVEHGG GRADGLLQDI VPLGIINPFP SSSSSSSSSS P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-202533101774Probable WRKY transcription factor 4
2lex_A2e-202533101774Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1181710.0BT118171.1 Picea glauca clone GQ04003_D10 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-27WRKY DNA-binding protein 49