PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00037957-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB_related | ||||||||
Protein Properties | Length: 91aa MW: 10021.3 Da PI: 6.8032 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.6e-07 | 7 | 50 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 rW+ ++++ a + + ++ +W+++a+++ g+++ ++k ++ PSME_00037957-RA 7 RWSFKQNKQFKVALAVHDKDgpdRWEKVASMVD-GKSAAEVKAHY 50 9*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.6E-4 | 4 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.06E-10 | 6 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.72E-6 | 7 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MAGGSTRWSF KQNKQFKVAL AVHDKDGPDR WEKVASMVDG KSAAEVKAHY DILVHDLELI 60 EKGMVPFPNY TEILTQGSSG NNSEKSVKDG V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-24 | 3 | 89 | 6 | 89 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008782489.1 | 5e-26 | protein RADIALIS-like 3 isoform X1 | ||||
Refseq | XP_021642455.1 | 4e-26 | protein RADIALIS-like 1 | ||||
Swissprot | Q1A173 | 2e-24 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
Swissprot | Q58FS3 | 2e-24 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A482DK94 | 5e-27 | A0A482DK94_ARIFI; RADIALIS 3 (Fragment) | ||||
STRING | XP_008782489.1 | 2e-25 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-26 | RAD-like 6 |
Publications ? help Back to Top | |||
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