PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PSME_00037800-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 170aa MW: 19011.5 Da PI: 6.8871 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 25.6 | 1.4e-08 | 47 | 127 | 226 | 304 |
GRAS 226 evLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 + L+ ++lsP v+++ ++n++ Fle f+++le ++fds ea+l ++ +r++vEr + ++ + v+ g+ PSME_00037800-RA 47 NSLSGSRHLSPVAVTLATGPhgDERNRAAFLESFCRCLEELCTIFDSHEAGLLEQGLARAMVERIFSEPTMCRRVMSYGRV 127 5677889********9975431555****************************************9999999999988876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 4.8E-6 | 47 | 127 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MEALRSNGNY DGTDYLRITT IKWADNDDVC AILATPVEGC RNHSYYNSLS GSRHLSPVAV 60 TLATGPHGDE RNRAAFLESF CRCLEELCTI FDSHEAGLLE QGLARAMVER IFSEPTMCRR 120 VMSYGRVDTR QSNVVNLPLR AGYREGSISN NSMLYAKYTL VCSRVADLMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0B4UEG5 | 7e-38 | A0A0B4UEG5_PINRA; SCL16 (Fragment) |