PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037770-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 210aa    MW: 23698.3 Da    PI: 5.411
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037770-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.7e-162676155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++kG+r +k +g W +eIr p++   r++++lg++ tae+Aa+a++aa  +l+g
  PSME_00037770-RA 26 PQFKGIRLRK-WGTWGSEIRMPKT---RQKIWLGSYKTAEQAARAYDAAVYCLRG 76
                      689*****99.**********965...49************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.73E-252684No hitNo description
PfamPF008472.7E-82676IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-182785IPR016177DNA-binding domain
SMARTSM003803.3E-292790IPR001471AP2/ERF domain
PROSITE profilePS5103220.62784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-272784IPR001471AP2/ERF domain
PRINTSPR003672.1E-72839IPR001471AP2/ERF domain
PRINTSPR003672.1E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGKFPESEED HGQLALPYQD SGQKRPQFKG IRLRKWGTWG SEIRMPKTRQ KIWLGSYKTA  60
EQAARAYDAA VYCLRGPNAK FNFPGSVPAS IPSAFSLSRR QIQLAASRYA RDELPSNSSS  120
PSPHKNKNKN KVREEPDCPT ESSLVSETVI PNETGQQISE EWDMALWKSL FDGSDCANLE  180
KLPSIDEALG FDANQTLQEE EEHDGFFWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-132284972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ97e-59D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.15e-33ERF family protein