PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00037755-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | HSF | ||||||||
Protein Properties | Length: 226aa MW: 25683.1 Da PI: 9.3361 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.2 | 1.5e-34 | 19 | 111 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+y++++d+++++++sw +n+n+fvv++++ef+ +vLp+yF h+n++SFvRQLn+YgF+k+ + + eF+++ F kg+k+ll PSME_00037755-RA 19 FLVKTYRLVDDPSTDHIVSWGDNNNTFVVWKSKEFSASVLPSYFNHTNVSSFVRQLNTYGFRKIVRGR---------CEFANELFMKGQKHLL 102 9***************************************************************9988.........67************** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i+r+k + PSME_00037755-RA 103 SHIQRRKPS 111 ******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.3E-51 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 5.7E-36 | 17 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.29E-32 | 17 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.9E-18 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-29 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-18 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-18 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGGSEPVLRD AGRLVAAPFL VKTYRLVDDP STDHIVSWGD NNNTFVVWKS KEFSASVLPS 60 YFNHTNVSSF VRQLNTYGFR KIVRGRCEFA NELFMKGQKH LLSHIQRRKP STFTVQKEYD 120 KYSLFQPISP TQHSDDSAAV PSVSHENETL KRNNSLLLSE IARLENTLKR DVTLFIRQNL 180 RVSPLINLDT NIDNPSPSSS MTDVAEEIRA EEIRVSPPKL FGVPLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 19 | 108 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 19 | 108 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 19 | 108 | 29 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ063376 | 5e-47 | FJ063376.1 Pinus taeda isolate 4944 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063378 | 5e-47 | FJ063378.1 Pinus taeda isolate 4943 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063379 | 5e-47 | FJ063379.1 Pinus taeda isolate 4957 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063380 | 5e-47 | FJ063380.1 Pinus taeda isolate 4954 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063381 | 5e-47 | FJ063381.1 Pinus taeda isolate 4958 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063382 | 5e-47 | FJ063382.1 Pinus taeda isolate 4952 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063385 | 5e-47 | FJ063385.1 Pinus taeda isolate 4950 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063388 | 5e-47 | FJ063388.1 Pinus taeda isolate 4948 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063389 | 5e-47 | FJ063389.1 Pinus taeda isolate 4951 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063390 | 5e-47 | FJ063390.1 Pinus taeda isolate 4959 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063391 | 5e-47 | FJ063391.1 Pinus taeda isolate 4949 anonymous locus 0_17860_02 genomic sequence. | |||
GenBank | FJ063392 | 5e-47 | FJ063392.1 Pinus taeda isolate 4942 anonymous locus 0_17860_02 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9C635 | 8e-50 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | H9WUJ6 | 5e-82 | H9WUJ6_PINTA; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 3e-52 | heat shock transcription factor B4 |