PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037738-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family RAV
Protein Properties Length: 613aa    MW: 68673.4 Da    PI: 8.6999
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037738-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.95.9e-14178226155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r++lg+f ++e+Aaka+++a++k++g
  PSME_00037738-RA 178 SHYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNSEEDAAKAYDRAALKFRG 226
                       79****9888.8*********3.....5*************************98 PP
2B397.21.1e-30328430199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+k+ tpsdv+k++rlv+pk++ae++     +   e++  l +ed+ gr+W+++++y+ +s++yvltkGW++Fvk+++L++gD+v F++ +++
  PSME_00037738-RA 328 FDKAVTPSDVGKLNRLVIPKQHAEKYfpldaN-YREKGLVLNFEDKMGRVWRFRYSYWSSSQSYVLTKGWSRFVKDKKLEAGDIVSFHRGSSK 419
                       89***************************954.4568889************************************************87768 PP

                       EE..EEEEE-S CS
                B3  89 efelvvkvfrk 99 
                         +l+++++r+
  PSME_00037738-RA 420 LHQLYISWRRR 430
                       88899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-18178235IPR016177DNA-binding domain
PfamPF008473.7E-9178226IPR001471AP2/ERF domain
CDDcd000183.46E-26178233No hitNo description
Gene3DG3DSA:3.30.730.102.7E-21179234IPR001471AP2/ERF domain
SMARTSM003802.2E-29179240IPR001471AP2/ERF domain
PROSITE profilePS5103220.784179234IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-39324431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-30326429IPR015300DNA-binding pseudobarrel domain
CDDcd100172.02E-22326421No hitNo description
PROSITE profilePS5086314.692328431IPR003340B3 DNA binding domain
SMARTSM010193.2E-26328431IPR003340B3 DNA binding domain
PfamPF023621.6E-27328430IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MLLCVMLNLQ GGDKSFTAQT SMWLSEIDSP DVALRLACFP TGISSEKNAS ASTPVSPVIV  60
CQDLSAREEA QELTVNRATR GFAEDNQDDE VGSAMTEEFN SSSIMSVSEN ERQPKQEGVR  120
FEDWASAKPM DKNLPGLEKM DQNGIMSLLS GSGRELHGIE DLRRYSLSTE QAGKLPSSHY  180
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNSE EDAAKAYDRA ALKFRGRDAI TNFSLDRDGD  240
PEVRFMREHK KEEIVDMLRK HSYDEEFGHH SKKIMTTAAR LAAMNGAKTS GAEESGLINL  300
VCQENQPAVH GNANGVASMR GLAREHLFDK AVTPSDVGKL NRLVIPKQHA EKYFPLDANY  360
REKGLVLNFE DKMGRVWRFR YSYWSSSQSY VLTKGWSRFV KDKKLEAGDI VSFHRGSSKL  420
HQLYISWRRR PLCQSWQLGS GSQSYQSYPV NGSPSMNPFK SGTQAAVVYN AQWMPIFFPV  480
TQFNSNSSSL LRKVDRTLWP DSPGVLPFCF SAPANKQIER GSFPDVNPDR LPTMDLYHNN  540
QKSLSSGNGS TGIKPLDRFI NPTLPSVGEK PPEHKPTLSL DPTTKKGVRL FGVNLAEHQR  600
LLPQHHVQLN LFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-523244314114B3 domain-containing transcription factor NGA1
5os9_B5e-523244314114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QRH41e-108A0A0D6QRH4_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-97related to ABI3/VP1 1