PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037723-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 337aa    MW: 37379 Da    PI: 9.9922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037723-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.11.7e-53161451128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelvv+yLkkk+++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l
  PSME_00037723-RA  16 LPPGFRFHPTDEELVVHYLKKKASSTPLPV-TIIAEIDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIL 107
                       79****************************.89***************8888999************************************** PP

               NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++   ++++vg+kk Lvfy gr pkg kt+W+mheyrl
  PSME_00037723-RA 108 TStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 145
                       998888899***************************98 PP
2NAM49.41.5e-1515721078128
               NAM  78 tksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+g  +atg+dk++l++   ++++vg+kk Lvfy gr pkg kt+W+mheyrl
  PSME_00037723-RA 157 NKKGSLRATGTDKPILTStsgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 210
                       4678899*********998888899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-6010151IPR003441NAC domain
PROSITE profilePS5100557.31616240IPR003441NAC domain
PfamPF023654.6E-2817145IPR003441NAC domain
SuperFamilySSF1019416.15E-20160241IPR003441NAC domain
PfamPF023655.1E-6168210IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MESPASFSGS HQQPQLPPGF RFHPTDEELV VHYLKKKASS TPLPVTIIAE IDLYKFDPWE  60
LPGKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTST SGGTQKVGVK  120
KALVFYGGRP PKGIKTNWIM HEYRLADSGA RPSSFPNKKG SLRATGTDKP ILTSTSGGTQ  180
KVGVKKALVF YGGRPPKGIK TNWIMHEYRL ADSGARPSSF PNKKGSLRLD DWVLCRIYKK  240
NGHSQRVQGA ERDESPSADE VMTSLPNIEQ QNKLQLPKLG PFSGLLETDD PFIEGLLNDE  300
AMDGNGNISR LPHQVHSSDL SHNNFSNSNN NNSDFQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-651324614171NO APICAL MERISTEM PROTEIN
1ut4_B5e-651324614171NO APICAL MERISTEM PROTEIN
1ut7_A5e-651324614171NO APICAL MERISTEM PROTEIN
1ut7_B5e-651324614171NO APICAL MERISTEM PROTEIN
3swm_A5e-651324617174NAC domain-containing protein 19
3swm_B5e-651324617174NAC domain-containing protein 19
3swm_C5e-651324617174NAC domain-containing protein 19
3swm_D5e-651324617174NAC domain-containing protein 19
3swp_A5e-651324617174NAC domain-containing protein 19
3swp_B5e-651324617174NAC domain-containing protein 19
3swp_C5e-651324617174NAC domain-containing protein 19
3swp_D5e-651324617174NAC domain-containing protein 19
4dul_A5e-651324614171NAC domain-containing protein 19
4dul_B5e-651324614171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111677e-69BT111167.1 Picea glauca clone GQ03233_M04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149287.11e-99PREDICTED: NAC transcription factor 25
SwissprotA2YMR04e-88NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A0A0L2L32e-98A0A0A0L2L3_CUCSA; Uncharacterized protein
STRINGXP_004149287.14e-99(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-85NAC domain containing protein 25