PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00037716-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 158aa MW: 18125 Da PI: 4.7256

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037716-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.8	1.6e-10	109	147	5	45
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++E++l+++++k+lG + W++Ia +++ Rt +++ +w PSME_00037716-RA 109 SADEEDLIIRLHKLLGDR-WALIAGRLP-WRTTEEIEKYWK 147 799***********99.*****.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	8.7E-6	104	152	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.18E-7	105	147	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.2E-12	109	147	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-9	109	148	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.481	109	147	IPR017877	Myb-like domain
CDD	cd00167	1.06E-7	109	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MHRAQEPFGL LLSIQPQFRP NGHSSYIFCS FQANSRPTDT IYTYSLQTLF ILQEQKLELN 60 SGLKFSRKQS SSSNAMDAEK LQQQFSEGEG ESDSPGGRSG QESWDSDISA DEEDLIIRLH 120 KLLGDRWALI AGRLPWRTTE EIEKYWKMRS QETDQSSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT119471	4e-87	BT119471.1 Picea glauca clone GQ04106_B24 mRNA sequence.
GenBank	EF083696	4e-87	EF083696.1 Picea sitchensis clone WS02910_O04 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NQX0	3e-38	A9NQX0_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01060.1	7e-16	CAPRICE-like MYB3