PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037560-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family DBB
Protein Properties Length: 305aa    MW: 33610.1 Da    PI: 5.364
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037560-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.51e-06445540
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       C+ +++ e++ fC  ++  lC +C ++ H        H++ 
  PSME_00037560-RA  4 QCDACQRAEASVFCCADEAALCMKCDSKVHDAnklaskHQRL 45
                      7*****************************446777777765 PP
2zf-B_box32.12.3e-105798237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      + ++C+ ++e ++ +fC+ ++  lC+dC +++H+       H
  PSME_00037560-RA 57 DSPRCDICQERRAFFFCQADRAVLCRDCDFSIHSAneltakH 98
                      5789*****************************655666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.552147IPR000315B-box-type zinc finger
SMARTSM003361.7E-9147IPR000315B-box-type zinc finger
CDDcd000211.34E-7347No hitNo description
PfamPF006432.1E-5446IPR000315B-box-type zinc finger
SMARTSM003361.3E-1656103IPR000315B-box-type zinc finger
PROSITE profilePS501199.9456103IPR000315B-box-type zinc finger
PfamPF006437.8E-85799IPR000315B-box-type zinc finger
CDDcd000213.49E-1159103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKVQCDACQR AEASVFCCAD EAALCMKCDS KVHDANKLAS KHQRLSLLEP RSSSSSDSPR  60
CDICQERRAF FFCQADRAVL CRDCDFSIHS ANELTAKHSR FLIPGTRVSL KPMEASSCTE  120
KEVAPASVPD PVPALATVTK ALMPPVQRMP DHAQPSMDLP VDTVTSTSNS EFSQYLSEVE  180
QFLTSVSPER LDWGGSSEGD AFGKYMDLGW APNLGLLPEG FYGDSLAEVP HMPSPIPDSG  240
FCMYSRLGIT MKPKAKQHQQ QVPYFLAGFD NGDDNFTVPD IGFAPSAKRM RMSNTTLHDQ  300
QFFIM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0853580.0EF085358.1 Picea sitchensis clone WS02810_P15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVK40.0A9NVK4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31380.12e-37salt tolerance homologue