PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00037501-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 26710.1 Da PI: 7.5795 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.2e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ ++ +G g W++ ++ g+ R++k+c++rw +yl PSME_00037501-RA 14 KGAWTKQEDGRLIAHIRAHGEGAWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.6 | 1.4e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEdel+++++ +lG++ W++Iar++ gRt++++k++w+++ PSME_00037501-RA 67 RGNFSEEEDELIIKLHSLLGNK-WSLIARRLS-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.398 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.49E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-12 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.775 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.91E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MVRSPCCERA HINKGAWTKQ EDGRLIAHIR AHGEGAWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SEEEDELIIK LHSLLGNKWS LIARRLSGRT DNEIKNYWNT HIKRKLLSRG 120 IDPQTHRPLC VPHNSNTILS FPPIPDHEIP AFHTPKAAEI ADFFQYDVSE SSPFESAASE 180 DQENSDLNLD LCISLPSNSE NRASSVDRNI DSNFNSGHEL SCAHNIGPQI NFLQVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101254 | 1e-118 | BT101254.1 Picea glauca clone GQ0082_F08 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028718.1 | 1e-90 | PREDICTED: myb-related protein 308 | ||||
Swissprot | P81393 | 2e-83 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 2e-83 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A5JYE9 | 1e-118 | A5JYE9_PICGL; R2R3-MYB transcription factor MYB5 | ||||
STRING | XP_010028718.1 | 5e-90 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-84 | myb domain protein 4 |