PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00037500-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27496.3 Da PI: 8.1792 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.7e-14 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed +l+ ++ +G g W++ ++ g+ R++k+c++rw +yl PSME_00037500-RA 24 KGVWTKQEDGRLIAHIQAHGEGAWRSLPKAAGLLRCGKSCRLRWINYL 71 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.5 | 1.5e-18 | 77 | 121 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEdel+++++ +lG++ W++Iar++ gRt++++k++w+++ PSME_00037500-RA 77 RGNFSEEEDELIIKLHSLLGNK-WSLIARRLS-GRTDNEIKNYWNTH 121 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-22 | 15 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.384 | 19 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-28 | 22 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-9 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-12 | 24 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-7 | 27 | 71 | No hit | No description |
PROSITE profile | PS51294 | 28.775 | 72 | 126 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 75 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-17 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 77 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.58E-13 | 79 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNSACLFAVK IMRSPCCERA HINKGVWTKQ EDGRLIAHIQ AHGEGAWRSL PKAAGLLRCG 60 KSCRLRWINY LRPDLKRGNF SEEEDELIIK LHSLLGNKWS LIARRLSGRT DNEIKNYWNT 120 HIKRKLLSRG IDPQTHHPLC ARHNSNTILT FPPIPDHEIP AFQTRRAAEI ADFFPHDVSE 180 SSPIVPAVSE DQENSDLNLD LCISLPYNSC HAERRASSVD RNIDELSCAH NIGPQINFLQ 240 VL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-29 | 22 | 126 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101254 | 1e-115 | BT101254.1 Picea glauca clone GQ0082_F08 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008783376.1 | 1e-86 | myb-related protein 308-like | ||||
Swissprot | P81393 | 4e-80 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A3G6JFH7 | 1e-111 | A0A3G6JFH7_PINTA; Myb-related protein 4 | ||||
STRING | XP_008783376.1 | 5e-86 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-81 | myb domain protein 4 |
Publications ? help Back to Top | |||
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