PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00037407-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 474aa MW: 51692.1 Da PI: 4.7054

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00037407-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23	1.4e-07	111	138	30	57
HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57 r +L+ +lgL++rq ++WF rR k+kk PSME_00037407-RA 111 RVDLSLQLGLSDRQLQMWFFHRRLKDKK 138 789***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.52E-6	110	140	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.284	111	139	IPR001356	Homeobox domain
Pfam	PF00046	4.2E-5	111	138	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-6	112	153	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MTTSGYEDNG GCDEFGCNFG GGDFDGGGGG EGGCDDGGVG DGVGVWTGVE GFAGVCCEIW 60 SEEIPASEGV VGRSSWSSVL IGSVTDFDVP ITSPCWSQAG PVTIHFLMAV RVDLSLQLGL 120 SDRQLQMWFF HRRLKDKKEK DKEKEKEKDK EKEKEKEKQP RKEKAKPAPP SAPAHSASLM 180 PTSTKTNFYD DYDARKRPNL KLNSEGGGGW KKKSQVQNLH LHPTSLLQAI ASMEAHLGEP 240 LHDDGPILGV EFDQLPPGAF RSPIGESILG DFSKTLHLSL PEQIRLGLAL ADLDGTNQSQ 300 EGLSKHVPTF LEALSLLQPK ARTSLLLTPL FTNEVNVVNS LRSFESLSTS TGLVFDDILT 360 QLEEETDVAN IMEELGYGCT IDVSHCKYIL SFFSPLKEET VSKIISMVVH THTGLEDAHG 420 THSTFYTSMF NSSITDSSWL SSWNIDVLLD SIKQLVSVLP FTSSQSLYSV SCIY

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MTTSGYEDNG GCDEFGCNFG GGDFDGGGGG EGGCDDGGVG DGVGVWTGVE GFAGVCCEIW  60
SEEIPASEGV VGRSSWSSVL IGSVTDFDVP ITSPCWSQAG PVTIHFLMAV RVDLSLQLGL  120
SDRQLQMWFF HRRLKDKKEK DKEKEKEKDK EKEKEKEKQP RKEKAKPAPP SAPAHSASLM  180
PTSTKTNFYD DYDARKRPNL KLNSEGGGGW KKKSQVQNLH LHPTSLLQAI ASMEAHLGEP  240
LHDDGPILGV EFDQLPPGAF RSPIGESILG DFSKTLHLSL PEQIRLGLAL ADLDGTNQSQ  300
EGLSKHVPTF LEALSLLQPK ARTSLLLTPL FTNEVNVVNS LRSFESLSTS TGLVFDDILT  360
QLEEETDVAN IMEELGYGCT IDVSHCKYIL SFFSPLKEET VSKIISMVVH THTGLEDAHG  420
THSTFYTSMF NSSITDSSWL SSWNIDVLLD SIKQLVSVLP FTSSQSLYSV SCIY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	138	RRLKDKKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	2e-15	Homeodomain-like transcriptional regulator