PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037373-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 265aa    MW: 29470.3 Da    PI: 8.3528
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037373-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.22.6e-2813111194
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+l+p++     +++q++++ +++k++G++ +++ll++ pe+ r+++++sl+yeA+ r+ +PvyG++g+++++++  +
  PSME_00037373-RA  13 SCNGCRVLRKSCSESCILRPCLhwistAESQANATIFLAKFYGRAGLTNLLSNGPEHLRPAIFRSLLYEACGRMINPVYGSLGLLWSGNWAEC 105
                       6*********************9999778899***********************************************************99 PP

            DUF260  89 qlkael 94 
                       q+ ++ 
  PSME_00037373-RA 106 QAGVDS 111
                       987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.01112118IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-2313108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
PLSTNLEDIM RMSCNGCRVL RKSCSESCIL RPCLHWISTA ESQANATIFL AKFYGRAGLT  60
NLLSNGPEHL RPAIFRSLLY EACGRMINPV YGSLGLLWSG NWAECQAGVD SVLRGSFCAV  120
PQGNFIYQDP EDTVQMRAIA VPQLRRSVKP RGRLKDLSNG KRKRKEGERG PNRNHINSSD  180
ISDDWSDVRN AVQTAHNGNE RGIEKYSTFN SRREHDKFIC ANQAEMEFGQ DPCSLKTNEP  240
KDTVGLELTL CSQGSTSPAE KLSSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.13e-62LOB domain-containing protein 40