PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037372-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 312aa    MW: 34667 Da    PI: 8.5485
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037372-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.42.3e-2881177192
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+l+p++     +++q++++ +++k++G++ +++l++++pe+ r+ +++sl+yeA+ r+ +PvyG+vg+++++++  +
  PSME_00037372-RA  81 SCNGCRVLRKGCSDSCILRPCLnwistAESQANATVFLAKFYGRAGLTNLISNAPEHLRPGTFRSLLYEACGRMVNPVYGSVGLLWSGNWAEC 173
                       6*********************9999778899**********************************************************999 PP

            DUF260  89 qlka 92 
                       q+ +
  PSME_00037372-RA 174 QAGV 177
                       8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.86980186IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-2381175IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
ALRNHIGSAG PANPLITPFT SLAREKSLLS LVLILRPEAW FISFYLLLFP GGIVSTKLED  60
IIYFLFMLAL FVRAEDILRM SCNGCRVLRK GCSDSCILRP CLNWISTAES QANATVFLAK  120
FYGRAGLTNL ISNAPEHLRP GTFRSLLYEA CGRMVNPVYG SVGLLWSGNW AECQAGVDSI  180
LRGSFRAVPD GNFLYPDRED TVPKKAIAIP QLLRSVKGRG RLKGLSHAKP KRKEGERAPN  240
RNPIHSINGL SDNGKIDDKC IEHYFTFNSV QEHDEFVTSD QSEMELYGRD LCSLKTNEPK  300
VVCNTVGLEL TL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022862609.14e-59LOB domain-containing protein 41-like
RefseqXP_024310952.16e-59LOB domain-containing protein 42
TrEMBLA0A0D6RB685e-60A0A0D6RB68_ARACU; Uncharacterized protein
STRINGBRADI4G16750.12e-58(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-59LOB domain-containing protein 40