PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037152-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 354aa    MW: 39978.7 Da    PI: 6.5035
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037152-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.6e-181663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l+++++ +G g+W+t +r+ g+ R++k c++rw +yl
  PSME_00037152-RA 16 RGPWTPEEDLRLIKYIETHGEGNWRTLPRKAGLQRCGKGCRLRWMNYL 63
                      89********************************************97 PP
2Myb_DNA-binding50.54.8e-1673114548
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +++E+e +v+++k+lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00037152-RA  73 SPDEEEMIVRLHKLLGNR-WSLIAGRIP-GRTDNEVKNYWNTHL 114
                       89****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5471163IPR017930Myb domain
SuperFamilySSF466894.49E-3013110IPR009057Homeodomain-like
SMARTSM007172.9E-121565IPR001005SANT/Myb domain
PfamPF002499.8E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231770IPR009057Homeodomain-like
CDDcd001676.80E-111863No hitNo description
PROSITE profilePS5129425.0364118IPR017930Myb domain
SMARTSM007173.7E-1568116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2471118IPR009057Homeodomain-like
PfamPF002494.2E-1472114IPR001005SANT/Myb domain
CDDcd001674.46E-1273114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRARTPCCS YVGLSRGPWT PEEDLRLIKY IETHGEGNWR TLPRKAGLQR CGKGCRLRWM  60
NYLRPNVKHG HISPDEEEMI VRLHKLLGNR WSLIAGRIPG RTDNEVKNYW NTHLRKKVNA  120
TTCNSQSLCK QPSSFDEICE GGTGILNINE MESSFTPCKD ADITRRTGKD QNKGSSCSHT  180
GEIVSFVGFD DRSAYVARDA ESIENWKQLI VGSHDPAINM DLIYSTVNHI DSAWPHGKHH  240
PSSNMPSITI YSPEFKPMAS SSDHTIPAFY HSISESDVAS MQGFESRLQV DNFGSVNYMN  300
CWEKPRGDGS NYLQSKTTVE PEIHTPPLGF STDDEFPIDC DVFNEFRDMV LPES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141195109B-MYB
1mse_C3e-27141182105C-Myb DNA-Binding Domain
1msf_C3e-27141182105C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.14e-60myb domain protein 5