PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00036966-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | ZF-HD | ||||||||
Protein Properties | Length: 168aa MW: 18195.9 Da PI: 7.1596 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99 | 3.4e-31 | 102 | 157 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 v Y eC+kNhAas+Gg+avDGCgEfm+s geegtaaalkCaAC+CHR FHRre e+ PSME_00036966-RA 102 DVWYGECQKNHAASIGGYAVDGCGEFMAS-GEEGTAAALKCAACNCHRRFHRREFEN 157 689*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-21 | 101 | 164 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.3E-29 | 103 | 155 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-27 | 105 | 154 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.505 | 105 | 154 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MGRSAGFSLG GSYASHHHQQ QQQEIRSGLP TNGAGGSFVA IANSVDLMHL HGTDLFPYTH 60 GQASYHSQIQ DQSVGSVQKM RPSDVHHTEA TRRGADASFR KDVWYGECQK NHAASIGGYA 120 VDGCGEFMAS GEEGTAAALK CAACNCHRRF HRREFENGTL CECHDTGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101040 | 2e-92 | BT101040.1 Picea glauca clone GQ0065_E22 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022740047.1 | 8e-31 | mini zinc finger protein 2-like | ||||
TrEMBL | A9NYD8 | 9e-38 | A9NYD8_PICSI; Uncharacterized protein | ||||
STRING | POPTR_0004s12510.1 | 2e-29 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 2e-29 | mini zinc finger 2 |