PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036938-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 355aa    MW: 38405.9 Da    PI: 7.6828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036938-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-081761244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       rW+ e d  + +a +++  +   +W++Ia+ ++ g+ + ++k+++
  PSME_00036938-RA 17 SRWSREQDMAFENALALHNEEckdRWEKIAASVP-GKDAAEIKLHY 61
                      69*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.7441469IPR017884SANT domain
SMARTSM007175.8E-61567IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-91771IPR009057Homeodomain-like
PfamPF002492.8E-61861IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-41862IPR009057Homeodomain-like
CDDcd001674.26E-71861No hitNo description
PROSITE profilePS512937.134183236IPR017884SANT domain
SMARTSM007171.3184234IPR001005SANT/Myb domain
CDDcd001670.00169192232No hitNo description
SuperFamilySSF466891.2E-8194237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-4194230IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-9194234IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTRSYPDPPA SSTPESSRWS REQDMAFENA LALHNEECKD RWEKIAASVP GKDAAEIKLH  60
YEILVEDIEC IEAGLIPLPA YVSSGEESAG QAVEIHGTKN RSHSTNFHSG DVNPTGKGGS  120
KADQERRKGI AWTEEEHSCP TARTRSGLPE MVLLQPETYR LLPEITRGTS EATWINSVAA  180
RVQDDCSDTV YDRQLFLLGL DKYRKGDWRS ISRNFVISRT PTQVASHAQK YFIRMNSASK  240
DRRRSSIHDI TSVNGGDTST PQGPITGHGN GSTGAVAKPA KSLSQSGLPR VVAYGPVVGQ  300
PISGPRGSAV GTPIIIPSGH VPYVSRGPIS GQVVPGTPMN IVPVAYPVSQ STMHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-151085277RADIALIS
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1239641e-162BT123964.1 Picea sitchensis clone WS04719_C07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520829.13e-98transcription factor SRM1
RefseqXP_022631662.13e-98transcription factor SRM1
RefseqXP_022631663.13e-98transcription factor SRM1
TrEMBLA0A0D6R5A21e-125A0A0D6R5A2_ARACU; Uncharacterized protein
STRINGXP_007153178.19e-97(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-73MYB family protein