PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036893-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 355aa    MW: 39906.3 Da    PI: 4.8706
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036893-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.31.2e-30101491128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......tk 79 
                       lp G++F+P++++l+  +L++k+   +       +++ ++++e  +i++++P++L+  vk++ ++++fF++++k+y+tg+rk+r+      ++
  PSME_00036893-RA  10 LPSGVKFDPSEQQLL-GHLAAKLGIGNarphafiNDFIKTVEEDdGICYTHPENLE-GVKKDGSNTHFFHRTAKAYTTGTRKRRKieeidtID 100
                       699************.789999877775666543222223444435*********8.7788899********************855655444 PP

               NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                       + +W++tg++++v++ +ge++g+kk++v+  + + +k+ kt+Wvmh+y+l
  PSME_00036893-RA 101 KFRWHKTGNTRKVYE-NGEQIGCKKIMVLNMAlKGEKPLKTNWVMHQYHL 149
                       888************.999**********9655778888*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-323168IPR003441NAC domain
PROSITE profilePS5100529.30110168IPR003441NAC domain
PfamPF023651.2E-1111149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MKVAQDWPGL PSGVKFDPSE QQLLGHLAAK LGIGNARPHA FINDFIKTVE EDDGICYTHP  60
ENLEGVKKDG SNTHFFHRTA KAYTTGTRKR RKIEEIDTID KFRWHKTGNT RKVYENGEQI  120
GCKKIMVLNM ALKGEKPLKT NWVMHQYHLG TEDNEKENEF VVSKIFYQQE KQCDKNNPGI  180
PQEDAGTPIS KDDPLTPKTS TPPPPRSEKQ HTCLDRIEEE HLFCASLPQV ADLDATIHRP  240
SKRNDAECDG RAFPPAGESQ YFEDSQEQMD GSFSCQEILE NRSSQENVEG TNDIPGLSDC  300
GRIGGSALET EVHHPPFDLA NIVFDTPPDE LIPFDSQLSS QESLLGWLNN FGDSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1164363e-86BT116436.1 Picea glauca clone GQ03718_K12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011627944.15e-97SUPPRESSOR OF GAMMA RESPONSE 1 isoform X4
RefseqXP_020531151.15e-97SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2
RefseqXP_028118727.12e-97SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLB8LLI01e-173B8LLI0_PICSI; Uncharacterized protein
STRINGERM958164e-98(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.16e-70NAC family protein