PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036858-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 498aa MW: 55595.2 Da PI: 6.7692

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036858-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd ll ++++ +G g+W+t +++ g++R++k+c++rw +yl PSME_00036858-RA 22 RGPWSPEEDILLSQYIQAFGEGRWRTLPKKAGLKRCGKSCRLRWMNYL 69 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-21	13	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.882	17	73	IPR017930	Myb domain
SMART	SM00717	1.4E-13	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-14	22	69	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.43E-20	23	96	IPR009057	Homeodomain-like
CDD	cd00167	2.25E-10	24	69	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-6	72	95	IPR009057	Homeodomain-like
SMART	SM00717	23	74	175	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MQENTKSMAV RTPCCSKIGL NRGPWSPEED ILLSQYIQAF GEGRWRTLPK KAGLKRCGKS 60 CRLRWMNYLR PDVKRGYISP EEEDLILRLH RLLGNSQGID PRTHKPLPES LIETSAKCNT 120 GTPENNDMTP RPSLHESHPL QPDQTEVITN KTMKKCPESV GTGLNKDQYT TNNHIGSNDV 180 HLPRKKHKPD NAVDLFRTGT LTQPPHVIAP PEAINYYEGM ADMIQWKSKS KGSHAMGSTD 240 HMTPFMFHDL FPSTIPLPFT ESEKGVSILQ VSSSTSVLNN LSININNESF DPGLLGHNRS 300 SYWMNNPVMN FDMPLNAITV PGSQVADLYG DYNGQIGHSA TPPTTKSEYN VLYEGNQLSN 360 PTLGVGNFDL SKMHRRHHHV QKEESFMLPA EANAAVANQA NNSSNVHHMG SMVANQANNI 420 SNVHHMGPIP PDANSDLYSS YFVDSIAHED LLNTNNTNNN LESSFATSTS QALQVRLEPE 480 TPNLSYDFWS LPQYHPYV

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MQENTKSMAV RTPCCSKIGL NRGPWSPEED ILLSQYIQAF GEGRWRTLPK KAGLKRCGKS  60
CRLRWMNYLR PDVKRGYISP EEEDLILRLH RLLGNSQGID PRTHKPLPES LIETSAKCNT  120
GTPENNDMTP RPSLHESHPL QPDQTEVITN KTMKKCPESV GTGLNKDQYT TNNHIGSNDV  180
HLPRKKHKPD NAVDLFRTGT LTQPPHVIAP PEAINYYEGM ADMIQWKSKS KGSHAMGSTD  240
HMTPFMFHDL FPSTIPLPFT ESEKGVSILQ VSSSTSVLNN LSININNESF DPGLLGHNRS  300
SYWMNNPVMN FDMPLNAITV PGSQVADLYG DYNGQIGHSA TPPTTKSEYN VLYEGNQLSN  360
PTLGVGNFDL SKMHRRHHHV QKEESFMLPA EANAAVANQA NNSSNVHHMG SMVANQANNI  420
SNVHHMGPIP PDANSDLYSS YFVDSIAHED LLNTNNTNNN LESSFATSTS QALQVRLEPE  480
TPNLSYDFWS LPQYHPYV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-13	20	95	25	99	MYB TRANSFORMING PROTEIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	5e-43	myb domain protein 5