PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036776-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

M-type_MADS

Protein Properties

Length: 281aa MW: 31139.9 Da PI: 8.2096

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036776-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.4	2.9e-21	9	59	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk.lyeys 50 krien + rqvtfsk rn +lKKA+ELSvL daev ++ifs++gk lye++ PSME_00036776-RA 9 KRIENATSRQVTFSKHRNRLLKKAYELSVLYDAEVGLMIFSPRGKaLYEFA 59 79******************************************8799998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.137	1	62	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.8E-28	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.50E-31	3	62	No hit	No description
PRINTS	PR00404	1.0E-19	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.06E-21	3	69	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-20	10	58	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-19	38	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF52777	7.67E-6	88	274	No hit	No description
Gene3D	G3DSA:3.30.559.10	1.6E-4	94	180	IPR023213	Chloramphenicol acetyltransferase-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MVRGKTLMKR IENATSRQVT FSKHRNRLLK KAYELSVLYD AEVGLMIFSP RGKALYEFAN 60 PSSIALSILE FLICMDSTTM NCLSMIGTGA FFSACKRENT SHAAALASAY LRTAANIKEM 120 KEKKLNQFCF TGVLDCRPHF ETQLPETVLG NYSAGIFQGT RVKDDISFWD MARLISSKTK 180 MEISKHKHFS ELPVLAMLVG QPAESQWKNT ESMNVAGSLG PLASMHAVGP CFSACESMIE 240 GPDGPELCIS FTFATPVYTR DQMHSFATST LELLSSEYSK S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ086079	3e-95	FJ086079.2 Pinus taeda isolate 4784 anonymous locus 0_958_01 genomic sequence.
GenBank	FJ086083	3e-95	FJ086083.1 Pinus taeda isolate 4795 anonymous locus 0_958_01 genomic sequence.
GenBank	FJ086084	3e-95	FJ086084.1 Pinus taeda isolate 4788 anonymous locus 0_958_01 genomic sequence.
GenBank	FJ086087	3e-95	FJ086087.1 Pinus taeda isolate 4783 anonymous locus 0_958_01 genomic sequence.
GenBank	FJ086088	3e-95	FJ086088.1 Pinus taeda isolate 4797 anonymous locus 0_958_01 genomic sequence.
GenBank	FJ086089	3e-95	FJ086089.1 Pinus taeda isolate 4792 anonymous locus 0_958_01 genomic sequence.
GenBank	FJ086091	3e-95	FJ086091.1 Pinus taeda isolate 4789 anonymous locus 0_958_01 genomic sequence.
GenBank	FJ086092	3e-95	FJ086092.1 Pinus taeda isolate 4785 anonymous locus 0_958_01 genomic sequence.
GenBank	FJ086093	3e-95	FJ086093.1 Pinus taeda isolate 4790 anonymous locus 0_958_01 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002994738.1	3e-57	uncharacterized protein LOC9652944
TrEMBL	D8TGM0	6e-56	D8TGM0_SELML; Uncharacterized protein
STRING	EFJ04195	1e-56	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	3e-27	AGAMOUS-like 14