PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036702-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 383aa    MW: 44550.7 Da    PI: 4.8685
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036702-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.22.6e-5691361128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtdeelv +yLk+kv+  k+el ++i+evdiyk+ePwdLp k  + +++ ewyfFs rd+ky++g+r+nrat++gyWkatgkd++
  PSME_00036702-RA   9 LPPGFRFHPTDEELVGYYLKRKVHCWKIEL-DIIPEVDIYKCEPWDLPeKsFMPGRDLEWYFFSARDRKYPNGSRTNRATEAGYWKATGKDRK 100
                       79****************************.99**************95334555777*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v s + +++g+kktLvfy+grap+g++tdWvmheyrl
  PSME_00036702-RA 101 VSS-HMRQIGMKKTLVFYRGRAPNGSRTDWVMHEYRL 136
                       **9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-644159IPR003441NAC domain
PROSITE profilePS5100560.5039159IPR003441NAC domain
PfamPF023652.4E-2910136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
LAVMAPMSLP PGFRFHPTDE ELVGYYLKRK VHCWKIELDI IPEVDIYKCE PWDLPEKSFM  60
PGRDLEWYFF SARDRKYPNG SRTNRATEAG YWKATGKDRK VSSHMRQIGM KKTLVFYRGR  120
APNGSRTDWV MHEYRLDEKE CEASAFLQEA YALCRVFKKS GPGPRMGEQY GAPVDHDFSS  180
DMGDLLYKNM PLSVKEQSEE MPSPVSQDQE DQTSSREASS EIINDMKGDD ATRQRSLQLL  240
RYGNDSCSFP SLYESTNHPK DELYDSSCPP LEVDYFPDIK ACLSPSHSRM PSKYLHGEQM  300
HLSIEEAEIL EQLYREMKTS EENNYISQFI NSDVAELQNN EDYLHLDDFV SRWNIEKDHR  360
KTRYSNGQEE AVVYPFNSFI SED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-54415912165NO APICAL MERISTEM PROTEIN
1ut4_B5e-54415912165NO APICAL MERISTEM PROTEIN
1ut7_A5e-54415912165NO APICAL MERISTEM PROTEIN
1ut7_B5e-54415912165NO APICAL MERISTEM PROTEIN
3swm_A6e-54415915168NAC domain-containing protein 19
3swm_B6e-54415915168NAC domain-containing protein 19
3swm_C6e-54415915168NAC domain-containing protein 19
3swm_D6e-54415915168NAC domain-containing protein 19
3swp_A6e-54415915168NAC domain-containing protein 19
3swp_B6e-54415915168NAC domain-containing protein 19
3swp_C6e-54415915168NAC domain-containing protein 19
3swp_D6e-54415915168NAC domain-containing protein 19
4dul_A5e-54415912165NAC domain-containing protein 19
4dul_B5e-54415912165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908787.11e-103NAC domain-containing protein 86 isoform X2
TrEMBLU5CUT81e-100U5CUT8_AMBTC; Uncharacterized protein
STRINGERN170611e-101(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.18e-92NAC domain containing protein 28