PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036696-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 332aa    MW: 37174.4 Da    PI: 6.0692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036696-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.71.8e-201461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+d+v+++G g+W++I+r  g+ R++k+c++rw +yl
  PSME_00036696-RA 14 KGPWSQEEDRKLIDYVQKHGFGNWRAIPRQAGLLRCGKSCRLRWKNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding422.2e-1367112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ + eE++ ++ ++ +lG++ W+tIa++++ gRt++++k+ w+++l
  PSME_00036696-RA  67 RGNLSSEEEQTIILLHGLLGNK-WSTIASYLP-GRTDNEIKNIWNTHL 112
                       78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.782965IPR017930Myb domain
SuperFamilySSF466892.62E-3110108IPR009057Homeodomain-like
SMARTSM007174.3E-171363IPR001005SANT/Myb domain
PfamPF002491.2E-181461IPR001005SANT/Myb domain
CDDcd001671.46E-141661No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129417.6666116IPR017930Myb domain
SMARTSM007174.2E-1166114IPR001005SANT/Myb domain
PfamPF002491.2E-1167112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRAPCCDKM GVKKGPWSQE EDRKLIDYVQ KHGFGNWRAI PRQAGLLRCG KSCRLRWKNY  60
LRPDLKRGNL SSEEEQTIIL LHGLLGNKWS TIASYLPGRT DNEIKNIWNT HLKKRLTHTG  120
TAAVNPVSTQ SSSSSTVPAV NNCLSKSPAM DNSHCFLGSP HSDCSFSYSK NLAPEFTADQ  180
IGLQGAEYGQ HLMETYRAHR YETDEMRSAH DYFNSLKIFL DIAEESSPKD HGGESYGIAG  240
VSHHITEDHD AGILDYINTD RLSCSHSTFY GTQLDHEILE TYLADHSQEY SSSSDSLQLV  300
YTPISLCQDF LLDLPESTVD VPDVLNPPLS MD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022849434.11e-66transcription factor MYB4-like
TrEMBLA0A0D6QWR71e-69A0A0D6QWR7_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-66myb domain protein 9