PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036650-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YC
Protein Properties Length: 322aa    MW: 36318.3 Da    PI: 4.4086
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036650-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC102.82.4e-3226737102
             NF-YC  37 kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102
                       +misaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ dfl+divprde+k
  PSME_00036650-RA   2 NMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVK 67 
                       7**************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.97E-18263IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-23263IPR009072Histone-fold
PfamPF008085.4E-10248IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNMISAEAPV LFSKACELFI LELTLRSWLH TEENKRRTLQ RNDIAGAISR GDVLDFLLDI  60
VPRDEVKEVD NGCTDYLPDT PDGFVEEPRI PEKDIPPGEL KQIQHSGDPY SVWNTENLGL  120
SYRFRELPKV LVKLGLIVLQ DDEYGGHWPG IPPAESMSYG GIHFPVMHAQ PYHHNLNPHM  180
MTAQQAMYQQ LIPHQPLMPD QQLMYQPPQG IVDGDPAERF YTGAAYCPVG KDIVDGDPAE  240
RFYTGAAYCP VGERSYTGST YCPVGSAAYL IYYYYCDIVA ITQVFISLRA LLIDQFDSKE  300
DLIDAVFTSS FIPGYILYLC AF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-301633395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13541RRTLQRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0850831e-88EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-35nuclear factor Y, subunit C2