PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036523-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 369aa MW: 40679.1 Da PI: 5.171

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036523-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.7e-08	29	52	22	46
T-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46 g+W++Ia+ ++ gRt++++k++w + PSME_00036523-RA 29 GRWSLIAAQLP-GRTDNELKNYWKS 52 26*******.*********75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.1E-7	28	61	IPR009057	Homeodomain-like
CDD	cd00167	8.60E-6	28	51	No hit	No description
PROSITE profile	PS50090	6.121	29	54	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.0E-10	29	58	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-5	29	52	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MYKCPRAILF CQLDNGHCVN DKQLDATFGR WSLIAAQLPG RTDNELKNYW KSCIKKKLNL 60 KHNLSAGSSS SQSNFTDTKS HIPTQSNSNL VSVQYAHDVL TSSQSSQKYL DGIPEGSQAP 120 NKAFNILNSC KNPLCVQGVM ELKHKQVHDQ TDHEFSVDTD LTNGQGICYP NLWTNASSIH 180 IHESFSNPAA FISPSLHAKS STCCSTTLAT HETPCFPDIS QLGSTGINIP ALIIESDSSK 240 VKLENDENHI TCIDYSNETD SSDIVDPGAY TSHEENFNDS LNYLSYDINL QGVPAYIDIS 300 YLLPPIKEAM KANPFPTLIG RRGANGLFET ETECRAEDGQ VTTRAQDDMY NSHPCHPSVS 360 SAVDQMDFT

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MYKCPRAILF CQLDNGHCVN DKQLDATFGR WSLIAAQLPG RTDNELKNYW KSCIKKKLNL  60
KHNLSAGSSS SQSNFTDTKS HIPTQSNSNL VSVQYAHDVL TSSQSSQKYL DGIPEGSQAP  120
NKAFNILNSC KNPLCVQGVM ELKHKQVHDQ TDHEFSVDTD LTNGQGICYP NLWTNASSIH  180
IHESFSNPAA FISPSLHAKS STCCSTTLAT HETPCFPDIS QLGSTGINIP ALIIESDSSK  240
VKLENDENHI TCIDYSNETD SSDIVDPGAY TSHEENFNDS LNYLSYDINL QGVPAYIDIS  300
YLLPPIKEAM KANPFPTLIG RRGANGLFET ETECRAEDGQ VTTRAQDDMY NSHPCHPSVS  360
SAVDQMDFT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	7e-12	myb domain protein 55