PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00036522-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 735aa MW: 80730.7 Da PI: 5.754 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.6e-14 | 52 | 100 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g W+ eEde+lv++++ G+ W+ +a+ g+ R++k+c++rw +yl PSME_00036522-RA 52 KGYWSREEDEKLVNYIRNNGNLgGWSYVAKQAGLQRCGKSCRLRWINYL 100 689*****************9899***********************97 PP | |||||||
2 | Myb_DNA-binding | 42.3 | 1.7e-13 | 106 | 150 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ +E+ l++++ lG++ W++Ia+ ++ gRt++++k++w k+ PSME_00036522-RA 106 RGSFSYQEEMLIIRLQSILGNR-WSLIAAQLP-GRTDNELKNYWKKL 150 899*******************.*********.***********997 PP | |||||||
3 | Myb_DNA-binding | 27.1 | 1e-08 | 459 | 521 | 18 | 46 |
HTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 18 qlGgg...................................tWktIartmgkgRtlkqcksrwqk 46 qlGg+ +W++Ia+ ++ gRt++q+k++w + PSME_00036522-RA 459 QLGGPppdratdgdskvatspsessaakrekhyyhgpstsRWSLIAAQLP-GRTDNQLKNYWKS 521 55555555555555555555555555555556666667889*********.***********75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.811 | 47 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.98E-25 | 50 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-8 | 51 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-12 | 52 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 54 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.86E-7 | 55 | 100 | No hit | No description |
PROSITE profile | PS51294 | 15.16 | 105 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-12 | 105 | 153 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-11 | 106 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.49E-9 | 108 | 150 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 108 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.041 | 406 | 525 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 8.707 | 469 | 527 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-7 | 489 | 529 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 493 | 528 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.1E-6 | 494 | 521 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.00E-5 | 499 | 520 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MRYTQGQGVI SEAVPSTPAL GMREQEKMRY TQGQGVISEG VPSTPSKPVL KKGYWSREED 60 EKLVNYIRNN GNLGGWSYVA KQAGLQRCGK SCRLRWINYL RPGLKRGSFS YQEEMLIIRL 120 QSILGNRWSL IAAQLPGRTD NELKNYWKKL NLKHDLSAGS SSSQSNVTDT KSHIPTHSNC 180 NSVSVHAHDV LMSSQSSQKY LDAIPEGFQA ANKTFNVVNS CKNMLCVPGL MELKHKQVQD 240 QTDNEFSVDT NFTNGQEICY PNLWTNASSI HIHEGFYNPA AFISPSLHAK SSTCDVHLII 300 DSCSSTALEP HVAPCFSDIS PCSTGIDTLA LVEREKLEND ENHIMIQYSN VTDSSDIVDP 360 GAYTSHEGDV SILDKHGSLY QSYSPLNPHC QFSWPVGEFS EIPCQKDCRD SEPEAAVAVE 420 ETMELGLGRD PKAPVATEVP EVRSPFGPAD GPTPEAAAQL GGPPPDRATD GDSKVATSPS 480 ESSAAKREKH YYHGPSTSRW SLIAAQLPGR TDNQLKNYWK SCIKKKINLK HDLSAGSSSS 540 ESNVNILTQS NSNSVSAHAH DVLASSQSSQ EYLDGIPEGS QAPNKVFNVV NSCKNDLLCV 600 SGVTNISLGS TGIETLALVE SEKLENDENH ITIEYSNPID SSDMVDPVAY TSHEGQVSIL 660 DKYGSLYQSY SPLNPHYQFS WSAGQFSKIP CQKDCRDSLN LSYDEYLGVP AFIDEGKSIS 720 YINRTTGSKW IVRNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 48 | 147 | 3 | 100 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 7e-44 | myb domain protein 55 |