PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036271-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 340aa    MW: 38259.3 Da    PI: 7.1915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036271-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+++++++G+g +W + + ++g++R++k+c++rw++yl
  PSME_00036271-RA 14 KGPWSPEEDCKLKEYIAKHGTGgNWLALPPKVGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP

2Myb_DNA-binding38.23.3e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd ++  ++   G++ W+ Ia+ ++ gRt++++k++w++
  PSME_00036271-RA  69 GGFSEEEDNIICSLFISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.856962IPR017930Myb domain
SuperFamilySSF466895.31E-2611109IPR009057Homeodomain-like
SMARTSM007175.0E-141364IPR001005SANT/Myb domain
PfamPF002497.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-231569IPR009057Homeodomain-like
CDDcd001673.57E-101662No hitNo description
PROSITE profilePS5129421.51963117IPR017930Myb domain
SMARTSM007174.6E-1167115IPR001005SANT/Myb domain
PfamPF002497.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-2370117IPR009057Homeodomain-like
CDDcd001674.62E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDCKLKEYIA KHGTGGNWLA LPPKVGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDNIIC SLFISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
FKDYQTSHLA AAKQEIKDVQ SYSTSESITS SNIYEPQLDQ HMNIDMDAHY SNFGPGKIPQ  180
MFKQNCGLTI AASRSNSDPA TFCLDPQQVQ LDHEVFDHNS CLRKLFQRSE GILVDHPSNN  240
CMTGISTSSS IQASNCIDAL QIPHSIAHDQ YNSDAASLQI YYETAASPVD PRSGALFAVE  300
MYNLFELYVW PARAEELCSI YSGNVWVVRS FVWRDGLCEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FKL21e-77MYB36_ARATH; Transcription factor MYB36
TrEMBLD5ABB61e-134D5ABB6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-79myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]