PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036270-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 301aa    MW: 33963.5 Da    PI: 8.6686
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036270-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l++++  +G+g +W + ++++g++R++k+c++rw++yl
  PSME_00036270-RA 14 KGPWSPEEDCKLKEYIDNHGTGgNWLALPQKVGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP

2Myb_DNA-binding37.17.1e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eE  ++  ++   G++ W+ Ia+ m+ gRt++++k++w++
  PSME_00036270-RA  69 GGFSEEENNIICSLFISIGSR-WSIIAAQMP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.392966IPR017930Myb domain
SuperFamilySSF466891.55E-2511109IPR009057Homeodomain-like
SMARTSM007171.1E-121364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221569IPR009057Homeodomain-like
CDDcd001673.23E-91662No hitNo description
SMARTSM007178.4E-1067115IPR001005SANT/Myb domain
PROSITE profilePS5129415.29767117IPR017930Myb domain
PfamPF002494.2E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2270117IPR009057Homeodomain-like
CDDcd001672.89E-773113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGKAPCCDKA NVKKGPWSPE EDCKLKEYID NHGTGGNWLA LPQKVGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEENNIIC SLFISIGSRW SIIAAQMPGR TDNDIKNYWN TRLKKKLLGR  120
FRDHHKTRLA AAKQESKDMQ IYYTAEAITS PNIYRPQKNQ QMNIDMDAYY SNLGPGIIPS  180
QMFKQNCGLA ATASNSNSES ATFWLDLQQA QLDQKLFDHN SCLTKPLQRT EGVLVDHRSD  240
NCKTAISNSY PIQASNCINP SEIPHSNAHD QYNLDAASLQ IFYETAASPV LMLVAEFRQT  300
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABB61e-132D5ABB6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-79myb domain protein 36