PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036264-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 567aa    MW: 61463.9 Da    PI: 5.1448
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036264-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-32298352155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kprlrWt+eLHerFveav+ L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYR+
  PSME_00036264-RA 298 KPRLRWTQELHERFVEAVKTLHGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRI 352
                       79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.078295355IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-30296353IPR009057Homeodomain-like
SuperFamilySSF466891.45E-17296352IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-23298353IPR006447Myb domain, plants
PfamPF002493.9E-8300351IPR001005SANT/Myb domain
PfamPF143796.0E-22391438IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MNSQKVDSLR HGKAAMEPHH AFQAVSTSIA FQTSNASNSD GPTIAGDNSS FQHLVPQAVS  60
SDSPEPVDSN QENPFPRFSL SSSSKKLNSS RMSQNIIPAL SNVVDTEHIS STSSTFCTDL  120
HFSPSSISQH HPPGILPFLP HPSECSLRAS VTPPSQSGFS QSLFSGDYIK QSYGDTHSGD  180
PLQDIFTFPD VPSECCQHNQ GATSSGIVGQ DHTKLDEWQD WPEQLPSDDD SLVASWTDLL  240
VVESGEDPGL NIIYPAAKLP TTGSIPQQRQ LHQEFCAPAG GNQFASSSTS SGNGTSNKPR  300
LRWTQELHER FVEAVKTLHG AEKATPKGVL KLMNVEGLTI YHVKSHLQKY RIAKYMPDQT  360
EGKTSCSAAG NEDNKRNYSD DLSTLDLKAG MQITEALRLQ MEMQKKLHEQ LEVQRALQLQ  420
IEEHGKYLQK MFEEQKQTDC SFKSQSLSVP RSSNPFAAAG PLKQSSDVGD DNSRSLSSER  480
IETVQSGGKS VGGTLPAVSA GDESLPVVVA DNDSEVVADT ENAPPYELGS IPEAEDGSKS  540
LPAKRIRSNP ENTCMDKLGP ISTRLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-25298355259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-25298355259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-25298355259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-25298355259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-25298355259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-25298355259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-25298355259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-25298355259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6762380.0EF676238.1 Picea sitchensis clone WS02723_G16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKH40.0B8LKH4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.31e-64G2-like family protein