PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00036249-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

M-type_MADS

Protein Properties

Length: 383aa MW: 42689.6 Da PI: 9.2385

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00036249-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.1	2.1e-22	127	177	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE.EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk.lyeys 50 kri+n + r+vtfsk rng+lKK +ELSvLCdaev ++ifs++gk lye++ PSME_00036249-RA 127 KRIKNATSRKVTFSKCRNGLLKKSYELSVLCDAEVGLMIFSPRGKaLYEFA 177 79******************************************8799998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.922	119	180	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.4E-30	119	179	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.11E-21	121	188	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-20	121	141	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.73E-30	121	180	No hit	No description
Pfam	PF00319	9.5E-21	128	176	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-20	141	156	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-20	156	177	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MKRNANNKFK DGLYHRRSWE ARVVVQAWEQ VVLSLVDCAR SFHLRAAAPS ARLGAKGWPS 60 MLGIEGCREG CSLAPKQAEV PGTFPLPYVY LTYIPLDVYE IQIIYLHVMP MLKRKGRRMV 120 RGKTLMKRIK NATSRKVTFS KCRNGLLKKS YELSVLCDAE VGLMIFSPRG KALYEFANPS 180 SIALSILEFL ICMESTTMNF LSMIGTGAFF SACERENTSH AAALASAYLR IAANIKEMRE 240 KKLNQFCFTG VLDCRPHLET QLPETVLGNY SAGIFQGTRV IKRPSITPRS SKRSGLFTMF 300 LGEPAESQWK NTESLNVAGS LGPLESMHAV GPCFSACESM IEGPDGPELC ISFTFATPVY 360 TRDQMHSFDT STLELMSSEY SKS

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MKRNANNKFK DGLYHRRSWE ARVVVQAWEQ VVLSLVDCAR SFHLRAAAPS ARLGAKGWPS  60
MLGIEGCREG CSLAPKQAEV PGTFPLPYVY LTYIPLDVYE IQIIYLHVMP MLKRKGRRMV  120
RGKTLMKRIK NATSRKVTFS KCRNGLLKKS YELSVLCDAE VGLMIFSPRG KALYEFANPS  180
SIALSILEFL ICMESTTMNF LSMIGTGAFF SACERENTSH AAALASAYLR IAANIKEMRE  240
KKLNQFCFTG VLDCRPHLET QLPETVLGNY SAGIFQGTRV IKRPSITPRS SKRSGLFTMF  300
LGEPAESQWK NTESLNVAGS LGPLESMHAV GPCFSACESM IEGPDGPELC ISFTFATPVY  360
TRDQMHSFDT STLELMSSEY SKS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ086087	1e-109	FJ086087.1 Pinus taeda isolate 4783 anonymous locus 0_958_01 genomic sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	2e-27	AGAMOUS-like 14