PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00036211-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 152aa MW: 17170.1 Da PI: 7.6602 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.4 | 1.1e-10 | 16 | 59 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT e +++ +a + + ++ +W+++a++++ g++++++k ++ PSME_00036211-RA 16 NWTSEQNKQFEKALAIYDKDradRWHKVAAMVP-GKSPEEVKKHY 59 7********************************.**********9 PP | |||||||
2 | Myb_DNA-binding | 31.3 | 4.7e-10 | 84 | 127 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WTt+ +++ +a + + ++ +W+ +a++++ g++++++k ++ PSME_00036211-RA 84 KWTTQQNKQFEKALAIYDKDtpdRWHNVASMVP-GKSPEEVKKHY 127 8********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.833 | 12 | 67 | IPR017884 | SANT domain |
SMART | SM00717 | 3.2E-8 | 13 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-5 | 15 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.58E-13 | 16 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.54E-8 | 16 | 59 | No hit | No description |
Pfam | PF00249 | 2.4E-8 | 16 | 59 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 11.884 | 80 | 135 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-9 | 81 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-5 | 83 | 135 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.07E-12 | 84 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.48E-7 | 84 | 131 | No hit | No description |
Pfam | PF00249 | 8.1E-8 | 84 | 127 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MASSSRKASY SGSVTNWTSE QNKQFEKALA IYDKDRADRW HKVAAMVPGK SPEEVKKHYE 60 ILEEDLNRIE AGKASSSSSD SVTKWTTQQN KQFEKALAIY DKDTPDRWHN VASMVPGKSP 120 EEVKKHYEIL LEDLNCIEAG KVPFPNYKSS GS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-32 | 8 | 152 | 2 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT113557 | 2e-67 | BT113557.1 Picea glauca clone GQ03413_A01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021680636.1 | 2e-35 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 3e-32 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A1E5UUT9 | 1e-44 | A0A1E5UUT9_9POAL; Protein RADIALIS-like 3 | ||||
STRING | POPTR_0007s13000.1 | 5e-33 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-32 | RAD-like 6 |
Publications ? help Back to Top | |||
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