PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036210-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 395aa    MW: 43619.2 Da    PI: 8.6989
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036210-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.7e-29181239259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg++WrKYGqK+ ++++ prsYY+C+ a  Cpvkk+v+r+a+dp+vv++tYegeH+h+
  PSME_00036210-RA 181 ADGCQWRKYGQKMTRNNPLPRSYYKCAWApACPVKKQVQRCAQDPTVVITTYEGEHTHS 239
                       69*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-32167239IPR003657WRKY domain
SuperFamilySSF1182909.94E-26173240IPR003657WRKY domain
PROSITE profilePS5081125.924175241IPR003657WRKY domain
SMARTSM007741.7E-33180240IPR003657WRKY domain
PfamPF031066.1E-25182238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MESQKIKTTL PIVAAEINRV NEENKKLKSM LESVNSKYKY LQKHIRSLLQ QPKGVDGRQI  60
FNPDHESEDV LCLGSINVNS GRTVSHQSDE SSSCNERGGG GGEKEKKNVK SMDDLQLPSK  120
KRKINYIRSE QIENGINSSM DDIPCYHGES PNKKLDFGEK RATAQKRIVA VRTRSDESAR  180
ADGCQWRKYG QKMTRNNPLP RSYYKCAWAP ACPVKKQVQR CAQDPTVVIT TYEGEHTHSL  240
SPLTMAVMHS DSSNQFIGEG TNTQNLVADN QFIPGIARIS TSSTLPTITL DLTDNRPSQT  300
GLPLQPPHLA ADSFQQSNPL SIEMGQVLDQ SELGHYSSFV QNYVASVKAD PNFTAALSVA  360
IAGSMLKLGD PVKGMMPKFH PVRQCANGSA HEAFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20170240776Probable WRKY transcription factor 4
2lex_A2e-20170240776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697366e-51EU269736.1 Pinus monticola WRKY transcription factor PmWRKY88 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK90.0A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.17e-35WRKY family protein