PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00036199-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 324aa    MW: 36920.3 Da    PI: 6.517
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00036199-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-162168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd +l++++ ++G g+W+  a+  g++Rt+k+c++rw +yl
  PSME_00036199-RA 21 KGPWTVEEDMQLIRYISLHGEGSWSFLAKATGLKRTGKSCRLRWINYL 68
                      79********************************************97 PP
2Myb_DNA-binding50.16.4e-1674117146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r + TteE+ l+v+++ ++G++ W++Ia+ ++ gRt++++k++w++
  PSME_00036199-RA  74 RSKITTEEESLIVELHGRWGNR-WSRIAQNLP-GRTDNEIKNYWRT 117
                       6788******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1541668IPR017930Myb domain
SuperFamilySSF466891.54E-2919115IPR009057Homeodomain-like
SMARTSM007177.7E-152070IPR001005SANT/Myb domain
PfamPF002494.5E-152168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-222275IPR009057Homeodomain-like
CDDcd001673.77E-112368No hitNo description
PROSITE profilePS5129424.55769123IPR017930Myb domain
SMARTSM007172.6E-1473121IPR001005SANT/Myb domain
PfamPF002498.1E-1475117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2376123IPR009057Homeodomain-like
CDDcd001671.56E-1078119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAKRTLWEFF AVEDEEVETR KGPWTVEEDM QLIRYISLHG EGSWSFLAKA TGLKRTGKSC  60
RLRWINYLRP DLKRSKITTE EESLIVELHG RWGNRWSRIA QNLPGRTDNE IKNYWRTRLK  120
KKMNLQAESR SSGMDAENQV TLERSMGSYF PTTSSQILAG LNSAEPSTNF RRQTTEEIAV  180
ETKKTPYLQA DIFPSSEQDC EQGLHGEIRH GSCQINEDGQ QSAVLQEHME GSDKRLEKTG  240
LPHTFSVGSL ATLRSFELFA DHGGTQDPCY MVASPDEQYS TCQDDNDRIK KLMVHESSLF  300
ICLSYSRVSG TRPAVNANYV ASFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-27211234105MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A222UAN38e-60A0A222UAN3_GINBI; R2R3MYB29
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40350.17e-56myb domain protein 24