PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00036021-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 27176.7 Da PI: 7.4081 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 31.1 | 6.5e-10 | 20 | 58 | 56 | 94 |
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkael 94 ++++sl+yeA+ r+ +P G+vg++ ++++ql+q+++e PSME_00036021-RA 20 AIFRSLLYEACGRMVNPFFGSVGLLCSGNWQLCQAAVES 58 689*******************************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 8.9E-6 | 20 | 58 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSSLLSAMNP YRFFFPFGTA IFRSLLYEAC GRMVNPFFGS VGLLCSGNWQ LCQAAVESIM 60 KGCPIHPIIV DSSGIQMPTE RCNTNPSVRS TLMETITNEL HKVKTKGRFK RRKGTAKDLS 120 LNNSDAEDLV PSQVRRCYPG EFQAAAAMDG TANNLVSSDS SSESLEHFDD PRNHKEAEIE 180 GNISKGMNLG IVNGNSCNDQ NDHKTVKESV FEISHPQART NAVRNLSIFT ICVEVSNAFM 240 NTNAKPT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3G6J9E0 | 1e-107 | A0A3G6J9E0_PINTA; ASYMMETRIC LEAVES 2-like protein 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 2e-23 | LOB domain-containing protein 40 |