PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035927-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 357aa    MW: 39545.2 Da    PI: 6.3821
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035927-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.5e-08971251846
                       HTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  18 qlGgg.tWktIartmgkgRtlkqcksrwqk 46 
                       + G+  +W++Ia+ ++ gRt++++k++w +
  PSME_00035927-RA  97 RCGKScRWSLIAAQLP-GRTDNELKNYWKS 125
                       5555579*********.***********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.90826127IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.5E-172639IPR009057Homeodomain-like
SMARTSM007174.5E-1030129IPR001005SANT/Myb domain
SuperFamilySSF466892.45E-830123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-640101IPR009057Homeodomain-like
CDDcd001672.01E-594124No hitNo description
PfamPF002495.2E-695125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-17102131IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MREQEKMRYT QGQGVISEGV PSTPSKPVLK KSYWSREEDE KLVNYIRNNG NLGGWSYVAK  60
QAGMYPCLLL FQLISSSFTP FYSIISNTMH MHSGLQRCGK SCRWSLIAAQ LPGRTDNELK  120
NYWKSCIKKK LNLKHDLSAG SSSSSSSQSN VTDTKSHIPT QSNCNSVSVH AHDVLTSSQS  180
SQKYLDAIPE GSQATNKTFN VVNSCTNMLC VPGVMELKHK QVQDQTDNEF SVDTNFTNGQ  240
EICYPNLWTD ASSIHIHEGS YNPAAFISPS LHAKSSTCDV QLIIESCIST TLEPHVAPCF  300
SDISPCSTGI DTLALVEREK LENDENHIMI HYSNATDSSN IVDPGAYTSH EGDVFFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.28e-22myb domain protein 55