PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035776-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 338aa    MW: 38345.5 Da    PI: 8.2584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035776-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.78.2e-52141421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeel+ +yLkkk++ ++l++  +i+++d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++
  PSME_00035776-RA  14 LPPGFRFHPTDEELILHYLKKKASCSPLPV-PIIADIDLYKFDPWELPGKASFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIV 105
                       79****************************.88***************988899*************************************** PP

               NAM  94 skkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                        ++++   vg+kk Lvfy+gr pkg kt+W+mheyrl
  PSME_00035776-RA 106 ISESTPipVGVKKALVFYRGRPPKGIKTSWIMHEYRL 142
                       97554456***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-648170IPR003441NAC domain
PROSITE profilePS5100561.11514170IPR003441NAC domain
PfamPF023656.3E-2715142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MERPITFLAS NPQLPPGFRF HPTDEELILH YLKKKASCSP LPVPIIADID LYKFDPWELP  60
GKASFGEREW YFFSPRDRKY PNGARPNRAA ASGYWKATGT DKPIVISEST PIPVGVKKAL  120
VFYRGRPPKG IKTSWIMHEY RLIDSGTSTT GLRKGSMRLD DWVLCRIYKK KNTSPRLTSA  180
KERDESGMED VLDTLPDIDQ DMKPVLPKVA SFTGLLDGEY PLLSCLLTDT SDYSGLGSLQ  240
ELESFQNNSK RDDQYMNNNN NTAKQQSSTA LSSIDSKVLD SLKRTLSLGC MEDEPVPAKR  300
ANINNYNNVP FFVNAFQPNQ TYYQYPQRLM FNPALEDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-741417215170Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284DSLKRT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1017581e-149BT101758.1 Picea glauca clone GQ01312_G20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841705.11e-101NAC transcription factor 56
SwissprotA2YMR01e-89NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A0D6QYG71e-147A0A0D6QYG7_ARACU; Uncharacterized protein
STRINGERN033801e-101(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.16e-90NAC domain containing protein 25