PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035672-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 278aa    MW: 31556.9 Da    PI: 8.2185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035672-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-163885148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEde+l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00035672-RA 38 KGAWSKEEDEILIAYIQAHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 85
                      79********************************************97 PP
2Myb_DNA-binding521.6e-1691135147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++ Edel+++++  lG++ W++Ia++++ gRt++++k++w+++
  PSME_00035672-RA  91 RGNFSPVEDELIIKLHCILGNK-WSLIASKLP-GRTDNEIKNYWNTH 135
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-252988IPR009057Homeodomain-like
PROSITE profilePS5129416.8053385IPR017930Myb domain
SuperFamilySSF466892.51E-2937132IPR009057Homeodomain-like
SMARTSM007173.2E-133787IPR001005SANT/Myb domain
PfamPF002496.9E-153885IPR001005SANT/Myb domain
CDDcd001671.37E-104085No hitNo description
PROSITE profilePS5129425.5486140IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2689140IPR009057Homeodomain-like
SMARTSM007171.6E-1590138IPR001005SANT/Myb domain
PfamPF002491.4E-1491135IPR001005SANT/Myb domain
CDDcd001674.80E-1193136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MRYFVLLVWN IGEALPVPLC HYSEMGRTPC CEKAHTNKGA WSKEEDEILI AYIQAHGEGC  60
WRSLPKAAGL QRCGKSCRLR WINYLRPDLK RGNFSPVEDE LIIKLHCILG NKWSLIASKL  120
PGRTDNEIKN YWNTHIKRKL LAIRGKDPYN THLHLPVRPD HGSSFQFSSE SIHVLPNRRC  180
KPNEVFTDFF QQQQQVNPGT WSGQKVISTS HQDVDLELSI TLPSLSCSAE QGDSSNNSKE  240
LSIGIRQSND FIKQDHQKRE ICCHIGLQTV GGSCCSDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-263714026128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826645.16e-78myb-related protein 308
RefseqXP_009101934.19e-78PREDICTED: transcription repressor MYB4
RefseqXP_012446914.19e-78PREDICTED: transcription repressor MYB6-like
RefseqXP_013644896.19e-78transcription repressor MYB4 isoform X1
RefseqXP_013644897.19e-78transcription repressor MYB4 isoform X2
SwissprotQ9S9K95e-76MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A222UB094e-91A0A222UB09_GINBI; R2R3MYB1
STRINGERM938822e-77(Amborella trichopoda)
STRINGGorai.009G288900.13e-77(Gossypium raimondii)
STRINGBra033572.1-P4e-77(Brassica rapa)
STRINGBo7g119670.14e-77(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.17e-78myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]