PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00035621-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 19441.2 Da PI: 6.7715 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.7e-05 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C+k+F ++ L +H+r H PSME_00035621-RA 29 YFCKICSKRFISRRPLGSHMRAH 51 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.346 | 29 | 51 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.49E-6 | 29 | 51 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-4 | 29 | 51 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.49E-6 | 139 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MVDVLYPSFQ SKELLENQGT ENPVENFSYF CKICSKRFIS RRPLGSHMRA HVPPSVPTYT 60 FAETEFQKRK RPRFSDAKSM EEKVDEEGLE GNESNLMYVM RMSPKRSWRF VDLDDSFLLG 120 RFVDLDDSFL LGQGLDSNPV ESSLNCDLWR KEFSCWKGLI GHKKLPL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |