PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00035515-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | GRAS | ||||||||
Protein Properties | Length: 760aa MW: 84762.8 Da PI: 5.1636 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 436.6 | 1.8e-133 | 393 | 760 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL+ecA+a+++ + a++l++ l+e ++ +gdp++Rlaay++e+L ar + s+ ++yk+l++++ + sse l+++++++ev+P++kf+ PSME_00035515-RA 393 KSLLIECAKAIAD--NLDADNLITALKEVVNIHGDPIHRLAAYMVEGLVARKHLSGGHIYKILKCKQPT---SSELLSYMHILYEVCPYFKFG 480 689********97..6789*************************************************9...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +++aN aI ea++ ++rvHiiDf+i qG QW++L+qa+a+R++g+p++RiTgv++p+s+ + + l+ +gerL+k+Ae+++vpfef++l PSME_00035515-RA 481 YVAANGAIAEAFKDKDRVHIIDFQIAQGSQWITLIQAFAARQGGSPHVRITGVDDPDSEyaRGQGLNLVGERLSKLAESCQVPFEFHAL-PVF 572 ********************************************************999999**************************5.778 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +d+ e+L+++pgEalaVn+ lqlh+++desvs++++rd++L++vk+l P+vv++veqea++n+++Fl rf+e+l+yy+a+f+sl+++lpr+ PSME_00035515-RA 573 GSDVYAEMLDIRPGEALAVNFPLQLHHMPDESVSTSNHRDRLLRMVKGLGPDVVTLVEQEANTNTAPFLPRFMETLSYYTAMFESLDVTLPRD 665 999****************************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 s+er++vE+++l+r+ivnv+acegaer+erhe ++kWr+rl++aGFk++pls+++++++ +l+ ++++ yr+ e++++l+lgW dr L+++S PSME_00035515-RA 666 SKERVNVEQHCLARDIVNVIACEGAERVERHELFGKWRSRLTMAGFKSYPLSSHVNSTIGVVLSSYNQN-YRLVEKHEALYLGWLDRDLIVAS 757 *******************************************************************66.*********************** PP GRAS 372 aWr 374 aW+ PSME_00035515-RA 758 AWK 760 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.444 | 366 | 741 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.3E-131 | 393 | 760 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 760 aa Download sequence Send to blast |
MSLASACQDS MRGDDNSYRT SPWFHGNLPV VPEQCTSGEI LNLQWRNTFR SCSTDLSPKQ 60 DGNFGIFHTS TTSERIGGTP KMIDQRSPIS PLSPQGTGSD GLPQTSQSQR FYCSERNQMS 120 DDLIQNSSHN DGSFNDQRYI HESFPFNTEH SHESSICIQS SSGGSPMSSQ HSQSYSCDSR 180 YFQSPEDAAD PVGNGYSGNE QPAASKFLEQ IETALLGPDG DFPADMDYVY GESNSEWSLE 240 AWSDFNDILD QTCNLGYPQT NNSRAPDNLQ QLPNRNPGYP QTNRADSSRV PDNLQQLPNH 300 NPGYPQTNKA DSSRSPDNLQ QLPNHNPGYT QTNKANSSRS PDNLQQLPSH GDRNVKVETV 360 NEVNFKTEHC SPSNSHEEQH DMEDLKISQG DVKSLLIECA KAIADNLDAD NLITALKEVV 420 NIHGDPIHRL AAYMVEGLVA RKHLSGGHIY KILKCKQPTS SELLSYMHIL YEVCPYFKFG 480 YVAANGAIAE AFKDKDRVHI IDFQIAQGSQ WITLIQAFAA RQGGSPHVRI TGVDDPDSEY 540 ARGQGLNLVG ERLSKLAESC QVPFEFHALP VFGSDVYAEM LDIRPGEALA VNFPLQLHHM 600 PDESVSTSNH RDRLLRMVKG LGPDVVTLVE QEANTNTAPF LPRFMETLSY YTAMFESLDV 660 TLPRDSKERV NVEQHCLARD IVNVIACEGA ERVERHELFG KWRSRLTMAG FKSYPLSSHV 720 NSTIGVVLSS YNQNYRLVEK HEALYLGWLD RDLIVASAWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-58 | 396 | 760 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110035 | 0.0 | BT110035.1 Picea glauca clone GQ03215_B19 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270168.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
TrEMBL | A0A0B4U8K1 | 0.0 | A0A0B4U8K1_PINRA; SCL10 | ||||
STRING | XP_010270168.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-180 | GRAS family protein |