PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00035379-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | TALE | ||||||||
Protein Properties | Length: 157aa MW: 18324.4 Da PI: 5.7138 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 5.7e-10 | 93 | 127 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ PSME_00035379-RA 93 KWPYPSETDKVTLAESTGLDQKQINNWFINQRKRH 127 679*****************************985 PP | |||||||
2 | ELK | 30.1 | 1.1e-10 | 50 | 68 | 4 | 22 |
ELK 4 hqLlrKYsgyLgsLkqEFs 22 +qLlrKYsg+ +sLkqEF+ PSME_00035379-RA 50 NQLLRKYSGCFSSLKQEFL 68 8*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 7.0E-5 | 47 | 68 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.202 | 47 | 67 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.3E-8 | 50 | 68 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.357 | 67 | 130 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-19 | 69 | 142 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-12 | 69 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 72 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.67E-12 | 79 | 131 | No hit | No description |
Pfam | PF05920 | 6.4E-18 | 87 | 126 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 105 | 128 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MQANVASQDK GYCDERERED GGGSSDEEFS FGEIEVHEVD PRAEDRELIN QLLRKYSGCF 60 SSLKQEFLKK KKKGKLPKDA RQKLLEWWNV HYKWPYPSET DKVTLAESTG LDQKQINNWF 120 INQRKRHWKP SEDMQFVVMD SLNPHGASFY MDGGAEC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY680405 | 1e-176 | AY680405.1 Picea mariana homeobox transcription factor KN4 (Kn4) mRNA, complete cds. | |||
GenBank | BT112586 | 1e-176 | BT112586.1 Picea glauca clone GQ03317_P14 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601359.1 | 6e-63 | homeobox protein knotted-1-like 2 | ||||
Refseq | XP_021601361.1 | 6e-63 | homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 4e-62 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A0S2CBH7 | 5e-83 | A0A0S2CBH7_PINPS; Homeobox transcription factor KN4 | ||||
STRING | POPTR_0002s11400.1 | 6e-62 | (Populus trichocarpa) | ||||
STRING | cassava4.1_010084m | 2e-61 | (Manihot esculenta) | ||||
STRING | XP_002510027.1 | 1e-61 | (Ricinus communis) | ||||
STRING | XP_010059832.1 | 4e-61 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-54 | KNOTTED-like from Arabidopsis thaliana |