PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035306-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 360aa    MW: 40683.2 Da    PI: 6.8958
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035306-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+++++++G+g +W + ++++g++R++k+c++rw++yl
  PSME_00035306-RA 14 KGPWSPEEDSKLKQYIEKHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                      79*********************************************97 PP

2Myb_DNA-binding40.46.8e-1369111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd+++  +    G++ W++Ia+ ++ gRt++++k++w++
  PSME_00035306-RA  69 GGFSEEEDKIICSLYISIGSR-WSLIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.481966IPR017930Myb domain
SuperFamilySSF466892.68E-2711109IPR009057Homeodomain-like
SMARTSM007177.7E-141364IPR001005SANT/Myb domain
PfamPF002491.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241569IPR009057Homeodomain-like
CDDcd001678.90E-111662No hitNo description
PROSITE profilePS5129415.83767117IPR017930Myb domain
SMARTSM007171.3E-1167115IPR001005SANT/Myb domain
PfamPF002491.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-2370117IPR009057Homeodomain-like
CDDcd001677.54E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKQYIE KHGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDKIIC SLYISIGSRW SLIAAQLPGR TDNDIKNYWN TKLKKNLFGK  120
RKDHQTYRLA IAKQESKDMQ SYATSEANTS PNNIYGPQQD QQMNINMDVP YSIFGPGTIP  180
QLFQQNSGST ITESSSSSEP AIFQLNPQQV QFDQEVSDYD FYVRKLFQSL EGSPVDHYSN  240
NNITMISPSS PIQASHCNIN ASQTQYFNAH NQHNSAAASH MSYEMSATSE LTYARHMENH  300
IKLENPSAAL VQNDNSLDFS GTNYDSVWMN NDGSACGILS RELNDLLLYN NDVLVQHREF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066500.12e-86transcription factor MYB36-like
TrEMBLD5ABB61e-142D5ABB6_PICSI; Uncharacterized protein
STRINGcassava4.1_011054m2e-85(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-80myb domain protein 36