PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00035305-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 359aa MW: 40700.1 Da PI: 9.469 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.6e-15 | 62 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl PSME_00035305-RA 62 KGPWSPEEDCKLKEYIDKFGTGgNWIALPKKAGLKRCGKSCRLRWLNYL 110 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.1 | 1.8e-12 | 119 | 158 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++eEd ++ + +G++ W+ Ia+ ++ gRt++++k++w+ PSME_00035305-RA 119 FSEEEDNIICSLYISMGSR-WSIIAAQLP-GRTDNDIKNHWN 158 8******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.707 | 57 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.17E-27 | 59 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-12 | 61 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-23 | 63 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.11E-9 | 64 | 110 | No hit | No description |
PROSITE profile | PS51294 | 21.186 | 111 | 165 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-11 | 115 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 118 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-10 | 118 | 158 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.39E-8 | 119 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MPCTGNRKTG VYNWKVSDQL KPKGFERFQY LIWYWKPFKA SSRQYSEVMG RTPCCDKANV 60 KKGPWSPEED CKLKEYIDKF GTGGNWIALP KKAGLKRCGK SCRLRWLNYL RPNIKIGGFS 120 EEEDNIICSL YISMGSRWSI IAAQLPGRTD NDIKNHWNLR LKKKLLGKHK NHQVCPLAAE 180 KQESKDMQSY ATSQVCTSPN IYEPQQQHGG VNHHMNTNMN FPYSNYGPGI ISQLSEQNCG 240 STITESSSSL GPATFQLNPQ QVQFDQEVFA NFSPTKLLQR PEGILVDYAS KNNLTMVSTN 300 SPIQASSCIN SPQIEHSTAH IQYKSDAASQ NSYETSATPV LIKEKRAIMF VDQSTYNRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 62 | 165 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021675884.1 | 7e-80 | transcription factor MYB36 | ||||
TrEMBL | D5ABB6 | 1e-139 | D5ABB6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-71 | myb domain protein 36 |