PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035297-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 322aa    MW: 36964.3 Da    PI: 6.5161
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035297-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.73.6e-1451133178
          trihelix   1 rWtkqevlaLiearremeerlr.....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                       rWt +e l+L++ +   e+++      +++++  +W  vs++++  +++r++ qC++kwe+l   ykkik+++  r+ ++s++
  PSME_00035297-RA  51 RWTLNEMLVLVREKCAAENEILcstclQSNADSDKWHNVSNRCKTSQISRTASQCRKKWESLFSNYKKIKDWDFHRQTQASRN 133
                       8**************99999984444446899*****************************************9997777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-1051129No hitNo description
PROSITE profilePS500906.24951113IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEGTHHHPSY LAQVEEEEGH TLSSVEEAEM PLQTIPQYIT SQSTRSHVTP RWTLNEMLVL  60
VREKCAAENE ILCSTCLQSN ADSDKWHNVS NRCKTSQISR TASQCRKKWE SLFSNYKKIK  120
DWDFHRQTQA SRNTNPNAKK QHKLPFYMEQ ELFDAMDAHL GKRPSRSPEP TFDNMDVGAD  180
DFLTSEDDLQ DDMFEMQYLA LSGNSPEPVY STGRKKTGRS PATEDDIEHG IATAIRQNSK  240
GIQAILREAT QARVRSSQLE REIYWRGVKM NRELELQIPE LDRELRRKQS EDLVKVLGGL  300
VSAINNLANA MQTNRPRQVN TQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NXN91e-114A9NXN9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-20Trihelix family protein