PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00035172-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23057.8 Da PI: 5.9184 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.3 | 1.9e-36 | 12 | 109 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+Cv+apyf++++ + +f ++hk+FGasn +kll +lp eer d++++++yeA+ar++dPv+G+v++i++lq+q+++lk PSME_00035172-RA 12 SCGACKFLRRKCVKGCVFAPYFCSDEmgAPHFGAIHKVFGASNFSKLLMHLPVEERYDTVATVLYEAQARLQDPVHGCVSHIFALQHQVANLK 104 6***********************995569**************************************************************9 PP DUF260 92 aelal 96 +la+ PSME_00035172-RA 105 GKLAV 109 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.563 | 11 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-35 | 12 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MASINMGGGG VSCGACKFLR RKCVKGCVFA PYFCSDEMGA PHFGAIHKVF GASNFSKLLM 60 HLPVEERYDT VATVLYEAQA RLQDPVHGCV SHIFALQHQV ANLKGKLAVG YSQLAACSSS 120 NGASQPEYVS GKQSEMPSLI SNSNSSSPYD PQYLNPLGDL QSIPSENVAV NNYDEEAREE 180 EGSWGSFSVC TQGTTNNYRD GDLQDLASAL LRRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-34 | 2 | 114 | 1 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-34 | 2 | 114 | 1 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022873090.1 | 2e-54 | LOB domain-containing protein 17-like | ||||
TrEMBL | A0A1U8AIH7 | 2e-51 | A0A1U8AIH7_NELNU; LOB domain-containing protein 29 | ||||
STRING | XP_010262268.1 | 3e-52 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 8e-50 | LBD family protein |