PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00035153-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | MYB | ||||||||
Protein Properties | Length: 484aa MW: 54375.4 Da PI: 5.322 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ ++ g+ R++k+c++rw +yl PSME_00035153-RA 14 KGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l PSME_00035153-RA 67 RGNFSLKEEQTIIQLHQILGNR-WSAIASHLP-GRTDNEIKNVWNTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.309 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.35E-31 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.03E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.688 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.76E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MGRAPWCDEM GLKKGPWTPE EDQILISYIN KHGHGNWRAL PKQAGLMRCG KSCRLRWTNY 60 LRPDIKRGNF SLKEEQTIIQ LHQILGNRWS AIASHLPGRT DNEIKNVWNT HLKKRLMQIG 120 VDPVTHAPRG YNVSSCYAAV SIRDNHSEQD DHHFQSHGCT SESVKKAFKK EGNSNESLPH 180 QPLQETKALQ EQGASNNLPL IQKTPDDQNM INSDQHEAYY SLDCSGNNYS YSSDSSRVLS 240 TKPMELVPAS PFGLCSAMDK EHNNSEKRAA VMPFDYIKTG EKKTLAVDYT SLLQSSYTDS 300 LKFILDDNGE DSNSIEYQVN WKPLAGNQQN FVSLGCGEVQ EDDKAVVQQA DPEGNQLVYD 360 SSMLNSNVEF WRHELSLWPA TTENNTLGDQ AVAYSDSSNG AAVPVNGQQK KVKVEPSGTN 420 FSVEQFLELA DHSMGTSMEG KSNIYDRWPD MNLADQDQGM EYWVNLLRQV GPLPFLETIS 480 PPDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT071306 | 0.0 | BT071306.1 Picea sitchensis clone WS02822_M18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | C0PSI2 | 0.0 | C0PSI2_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 4e-76 | myb domain protein 107 |