PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035153-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 484aa    MW: 54375.4 Da    PI: 5.322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035153-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00035153-RA 14 KGPWTPEEDQILISYINKHGHGNWRALPKQAGLMRCGKSCRLRWTNYL 61
                      79********************************************97 PP

2Myb_DNA-binding48.42.1e-1567112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++  E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  PSME_00035153-RA  67 RGNFSLKEEQTIIQLHQILGNR-WSAIASHLP-GRTDNEIKNVWNTHL 112
                       89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25764IPR009057Homeodomain-like
PROSITE profilePS5129424.309965IPR017930Myb domain
SuperFamilySSF466892.35E-3110108IPR009057Homeodomain-like
SMARTSM007171.2E-141363IPR001005SANT/Myb domain
PfamPF002497.6E-171461IPR001005SANT/Myb domain
CDDcd001672.03E-121661No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2665116IPR009057Homeodomain-like
PROSITE profilePS5129418.68866116IPR017930Myb domain
SMARTSM007173.5E-1466114IPR001005SANT/Myb domain
PfamPF002492.5E-1467112IPR001005SANT/Myb domain
CDDcd001673.76E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MGRAPWCDEM GLKKGPWTPE EDQILISYIN KHGHGNWRAL PKQAGLMRCG KSCRLRWTNY  60
LRPDIKRGNF SLKEEQTIIQ LHQILGNRWS AIASHLPGRT DNEIKNVWNT HLKKRLMQIG  120
VDPVTHAPRG YNVSSCYAAV SIRDNHSEQD DHHFQSHGCT SESVKKAFKK EGNSNESLPH  180
QPLQETKALQ EQGASNNLPL IQKTPDDQNM INSDQHEAYY SLDCSGNNYS YSSDSSRVLS  240
TKPMELVPAS PFGLCSAMDK EHNNSEKRAA VMPFDYIKTG EKKTLAVDYT SLLQSSYTDS  300
LKFILDDNGE DSNSIEYQVN WKPLAGNQQN FVSLGCGEVQ EDDKAVVQQA DPEGNQLVYD  360
SSMLNSNVEF WRHELSLWPA TTENNTLGDQ AVAYSDSSNG AAVPVNGQQK KVKVEPSGTN  420
FSVEQFLELA DHSMGTSMEG KSNIYDRWPD MNLADQDQGM EYWVNLLRQV GPLPFLETIS  480
PPDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0713060.0BT071306.1 Picea sitchensis clone WS02822_M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PSI20.0C0PSI2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.14e-76myb domain protein 107